Amico M.; Finelli M.; Rossi I.; Zauli A.; Elofsson A.; Viklund H.; von Heijne G.; Jones D.; Krogh A.; Fariselli P.; Martelli P.L.; Casadio R., PONGO: a web server for multiple predictions of all-alpha transmembrane proteins, «NUCLEIC ACIDS RESEARCH», 2006, 34, pp. W169 - W172 [Scientific article]
Occhipinti E.; Bec N.; Gambirasio B.; Baietta G.; Martelli PL.; Casadio R.; Balny C.; Lange R.; Tortora P., Pressure and temperature as tools for investigating the role of individual non-covalent interactions in enzymatic reactions: Sulfolobus solfataricus carboxypeptidase as a model enzyme, «BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS», 2006, 1764, pp. 563 - 572 [Scientific article]
Fariselli P.; Martelli P.L.; Casadio R., A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins, «BMC BIOINFORMATICS», 2005, 6(Suppl 4) S12 [Scientific article]
Casadio R.; Fariselli P.; Martelli PL., How many membrane proteins in the human genome?, in: Bionformatics ITalian Society
BITS 2005
Conference Proceedings, MILANO, Studio Pistocchi sas, 2005, pp. 20 - 20 (atti di: BITS 2005, Milano, 17-19/3/2005) [Abstract]
GIANNI T.; MARTELLI P.L.; CASADIO R.; CAMPADELLI-FIUME G., The ectodomain of herpes simplex virus glycoprotein H contains a membrane alpha-helix with attributes of an internal fusion peptide, positionally conserved in the herpesviridae family., «JOURNAL OF VIROLOGY», 2005, 79, pp. 2931 - 2940 [Scientific article]
Fariselli P.; Martelli PL.; Casadio R., The posterior Viterbi: a new decoding algorithm for Hidden Markov Models, in: Bioinformatics ITalian Society
BITS 2005
Conference Proceedings, MILANO, Studio Pistocchi sas, 2005, pp. 37 - 37 (atti di: BITS 2005, Milano, 17-19/3/2005) [Abstract]
Fariselli P.; Finelli M.; Rossi I.; Amico M.; Zauli A.; Martelli P.L.; Casadio R., TRAMPLE: the transmembrane protein labelling environment, «NUCLEIC ACIDS RESEARCH», 2005, 33, pp. W198 - W201 [Scientific article]
Marani P.; Martelli PL.; von Heijne G.; Finocchiaro G.; Fariselli P.; Casadio R., Annotazione di nuove proteine della membrana esterna di E.coli K12, in: Proceedings della Scuola Nazionale di Biofisica, XII ciclo: “Proteomica e Biofisica", s.l, s.n, 2004, pp. 46 - 46 (atti di: Scuola Nazionale di Biofisica, XII ciclo: “Proteomica e Biofisica", Bressanone (BZ), 13-15/9/2004) [Abstract]
DURANTE D.; CASADIO R.; MARTELLI P.L.; TASCO G.; PORTACCIO M.; DE LUCA P.; BENCIVENGA U.; ROSSI S.; DI MARTINO S.; GRANO V.; DIANO N.; MITA D.G., Isothermal and non-isothermal bioreactors in the detoxification of waste waters polluted by aromatic compounds by means of immobilised laccase from Rhus vernicifera, «JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC», 2004, 27, pp. 191 - 206 [Scientific article]
CASADIO R.; CALABRESE R.; CAPRIOTTI E.; COMPIANI M.; FARISELLI P.; MARANI P.; MONTANUCCI L.; MARTELLI PL.; ROSSI I.; TASCO G., Machine learning and the prediction of protein structure: the state of the art, in: Proceedings of the 10th International Conference on Information Processing and Management of Uncertainty in Knowledge-Based Systems, ROMA, La Sapienza, 2004, pp. 933 - 940 (atti di: 10th Int. Conf. on Information Processing and Management of Uncertainty in Knowledge-Based Systems, Perugia, 4-9/7/2004) [Contribution to conference proceedings]
F. Sparla; S. Fermani; P.L. Martelli; M. Zaffagnini; G. Falini; A. Ripamonti; R. Casadio; P. Trost, Merging crystallography, site-directed mutagenesis and molecular modelling to unravel the regulatory mechanism of photosynthetic GAPDH, in: Proceedings del Convegno FISV, s.l, s.n, 2004, pp. 22 - 22 (atti di: Convegno FISV, Riva del Garda, 30/09-3/10/2004) [Abstract]
MARTELLI P.L.; FARISELLI P.; CASADIO R., Prediction of disulfide-bonded cysteines in proteomes with a hidden neural network, «PROTEOMICS», 2004, 4, pp. 1665 - 1671 [Scientific article]
Martelli P.L.; Fariselli P.; Casadio R., An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins, «BIOINFORMATICS», 2003, 19, pp. 205 - 211 [Scientific article]
Casadio R.; Fariselli P.; Finocchiaro G.; Martelli P.L., Fishing new proteins in the twilight zone of genomes: The test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria, «PROTEIN SCIENCE», 2003, 12, pp. 1158 - 1168 [Scientific article]
Martelli P.L.; Fariselli P.; Tasco G.; Casadio R., The prediction of membrane protein structure and genome structural annotation, «COMPARATIVE AND FUNCTIONAL GENOMICS», 2003, 4, pp. 406 - 409 [Scientific article]
