Montanucci L.; Martelli P.L.; Fariselli P.; Casadio R., Robust determinants of thermostability highlighted by a codon frequency index capable of discriminating thermophilic from mesophilic genomes., «JOURNAL OF PROTEOME RESEARCH», 2007, 6, pp. 2502 - 2508 [Scientific article]
Sparla F.; Fermani S.; Falini G.; Martelli P.; Casadio R.; Pupillo P.; Ripamonti A.; Trost P., Structural basis of thioredoxin regulation in photosynthetic A2B2-glyceraldehyde-3-phospahte dehydrogenase, in: , «PHOTOSYNTHESIS RESEARCH», 2007, 91, pp. 235 - 236 (atti di: 14th international congress on photosynthesis, Glasgow, 22-27 July 2007) [Abstract]
Tress M.L.; Martelli P.L.; Frankish A.; Reeves G.A.; Wesselink J.J.; Yeats C.; Olason P.L.; Albrecht M.; Hegyi H.; Giorgetti A.; Raimondo D.; Lagarde J.; Laskowski R.A.; Lopez G.; Sadowski M.I.; Watson J.D.; Fariselli P.; Rossi I.; Nagy A.; Kai W.; Storling Z.; Orsini M.; Assenov Y.; Blankenburg H.; Huthmacher C.; Ramirez F.; Schlicker A.; Denoeud F.; Jones P.; Kerrien S.; Orchard S.; Antonarakis S.E.; Reymond A.; Birney E.; Brunak S.; Casadio R.; Guigo R.; Harrow J.; Hermjakob H.; Jones D.T.; Lengauer T.; Orengo C.A.; Patthy L.; Thornton J.M.; Tramontano A.; Valencia A., The implications of alternative splicing in the ENCODE protein complement., «PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA», 2007, 104, pp. 5495 - 5500 [Scientific article]
Bartoli L.; Capriotti E.; Fariselli P.; Martelli P.L.; Casadio R., The pros and cons of predicting protein contact maps- Protein structure prediction, in: Protein Structure Prediction, New York, Springer, 2007, pp. 199 - 217 (METHODS IN MOLECULAR BIOLOGY) [Chapter or essay]
Casadio R.; Fariselli P.; Martelli P.L.; Tasco G., Thinking the impossible -How to solve the protein folding problem with and without homologous structures and more-, in: Protein Folding Protocols, New York, Springer, 2007, pp. 305 - 320 (METHODS IN MOLECULAR BIOLOGY) [Chapter or essay]
Pierleoni A.; Martelli P.L.; Fariselli P.; Casadio R., BaCelLo: a balanced subcellular localization predictor, «BIOINFORMATICS», 2006, 22, pp. e408 - e416 [Scientific article]
Pierleoni A.; Martelli P.L.; Fariselli P.; Casadio R., BaCelLo: a balanced subcellular localization predictor, in: Proceedings of the ISMB 2006, SAN DIEGO (CA), ISCB, 2006, pp. x - x (atti di: Intelligent Systems for Molecular Biology 2006, Fortaleza (Brazil), 6-10/08/2006) [Abstract]
Martelli P.L.; Casadio R., Bioinformatics and membrane proteins: is it feasible to predict the 3D structure of a membrane protein?, in: Conference Proceedings of the 5th International Workshop on 'Structural characterisation of proteins by NMR, X-Ray diffraction and computational methods', s.l, s.n, 2006, pp. x - x (atti di: 5th International Workshop on 'Structural characterisation of proteins by NMR, X-Ray diffraction and computational methods', Centro congressi San Vito di Cadore, S.Vito di Cadore (BL), 16-18/06/2006) [Abstract]
Casadio R.; Fariselli P.; Martelli P.L., Conference proceedings of the Bioinformatics ITalian Society BITS 2006, BARI, Bioinformatics ITalian Society (B.IT.S.), 2006, pp. 214 . [Editorship]
Pierleoni A.; Martelli P.L.; Fariselli P.; Casadio R., eSLDB: eukaryotic Subcellular Localization DataBase., in: ISMB2006: Poster Abstracts, SAN DIEGO, CA, International Society for Computational Biology, 2006(atti di: Intelligent Systems for Molecular Biology, Fortaleza (Brazil), 6-10/8/2006) [Abstract]
Casadio R.; Calabrese R.; Capriotti E.; Compiani M.; Fariselli P.; Marani P.; Montanucci L.; Martelli P.L.; Rossi I.; Tasco G., Machine learning and the prediction of protein structure: the state of the art, in: Modern information processing -From theory to applications-, AMSTERDAM, Elsevier, 2006, pp. 359 - 370 (Modern information processing -From theory to applications-) [Chapter or essay]
S. Fermani; F. Sparla; G. Falini; Martelli, P. L.; M. Zaffagnini; A. Ripamonti; R. Casadio; P. Pupillo; Trost, P. B.; L. Martelli, Merging crystallography, site-directed mutagenesis and molecular modelling to unravel the regulatory mechanism of photosynthetic Gapdh, in: Abstracts, s.l, s.n, 2006, pp. 149 - 149 (atti di: 23rd European Meeting of Crystallography., Leuven (Belgio), 6-11 agosto 2006) [Abstract]
Amico M.; Finelli M.; Rossi I.; Zauli A.; Elofsson A.; Viklund H.; von Heijne G.; Jones D.; Krogh A.; Fariselli P.; Martelli P.L.; Casadio R., PONGO: a web server for multiple predictions of all-alpha transmembrane proteins, «NUCLEIC ACIDS RESEARCH», 2006, 34, pp. W169 - W172 [Scientific article]
Occhipinti E.; Bec N.; Gambirasio B.; Baietta G.; Martelli PL.; Casadio R.; Balny C.; Lange R.; Tortora P., Pressure and temperature as tools for investigating the role of individual non-covalent interactions in enzymatic reactions: Sulfolobus solfataricus carboxypeptidase as a model enzyme, «BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS», 2006, 1764, pp. 563 - 572 [Scientific article]
Fariselli P.; Martelli P.L.; Casadio R., A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins, «BMC BIOINFORMATICS», 2005, 6(Suppl 4) S12 [Scientific article]
