Schweke H.; Xu Q.; Tauriello G.; Pantolini L.; Schwede T.; Cazals F.; Lheritier A.; Fernandez-Recio J.; Rodriguez-Lumbreras L.A.; Schueler-Furman O.; Varga J.K.; Jimenez-Garcia B.; Reau M.F.; Bonvin A.M.J.J.; Savojardo C.; Martelli P.L.; Casadio R.; Tubiana J.; Wolfson H.J.; Oliva R.; Barradas-Bautista D.; Ricciardelli T.; Cavallo L.; Venclovas C.; Olechnovic K.; Guerois R.; Andreani J.; Martin J.; Wang X.; Terashi G.; Sarkar D.; Christoffer C.; Aderinwale T.; Verburgt J.; Kihara D.; Marchand A.; Correia B.E.; Duan R.; Qiu L.; Xu X.; Zhang S.; Zou X.; Dey S.; Dunbrack R.L.; Levy E.D.; Wodak S.J., Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study, «PROTEOMICS», in corso di stampa, 23, Article number: 2200323 , pp. 1 - 21 [Scientific article]
Madeo G.; Savojardo C.; Manfredi M.; Martelli P.L.; Casadio R., CoCoNat: a novel method based on deep learning for coiled-coil prediction, «BIOINFORMATICS», 2023, 39, Article number: btad495 , pp. 1 - 8 [Scientific article]Open Access
Savojardo C.; Martelli P.L.; Casadio R., Finding functional motifs in protein sequences with deep learning and natural language models, «CURRENT OPINION IN STRUCTURAL BIOLOGY», 2023, 81, Article number: 102641 , pp. 1 - 12 [Scientific article]Open Access
Manfredi M.; Savojardo C.; Martelli P.L.; Casadio R., ISPRED-SEQ: Deep Neural Networks and Embeddings for Predicting Interaction Sites in Protein Sequences, «JOURNAL OF MOLECULAR BIOLOGY», 2023, 435, Article number: 167963 , pp. 167963 - 167971 [Scientific article]
Correa F.; Luise D.; Palladino G.; Scicchitano D.; Brigidi P.; Martelli P.L.; Babbi G.; Turroni S.; Litta G.; Candela M.; Rampelli S.; Trevisi P., Influence of body lesion severity on oxidative status and gut microbiota of weaned pigs, «ANIMAL», 2023, 17, Article number: 100818 , pp. 1 - 9 [Scientific article]Open Access
Licata L.; Via A.; Turina P.; Babbi G.; Benevenuta S.; Carta C.; Casadio R.; Cicconardi A.; Facchiano A.; Fariselli P.; Giordano D.; Isidori F.; Marabotti A.; Martelli P.L.; Pascarella S.; Pinelli M.; Pippucci T.; Russo R.; Savojardo C.; Scafuri B.; Valeriani L.; Capriotti E., Resources and tools for rare disease variant interpretation, «FRONTIERS IN MOLECULAR BIOSCIENCES», 2023, 10, Article number: 1169109 , pp. 1 - 18 [Scientific article]Open Access
Savojardo C.; Babbi G.; Baldazzi D.; Martelli P.L.; Casadio R., A glance into mthfr deficiency at a molecular level, «INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES», 2022, 23, Article number: 167 , pp. 1 - 9 [Scientific article]Open Access
Manfredi, Matteo; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita, E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants, «BIOINFORMATICS», 2022, 38, pp. 5168 - 5174 [Scientific article]
P. Trevisi, G. Palladino, D. Luise, S. Turroni, F. Correa, P. Brigidi, P. Bosi, D. Scicchitano, G. Babbi, S.
Rampelli, M. Candela, P.L. Martelli, EU-CIRCLES project: microbial and health evolution of pigs reared in high and low sanitary condition, in: Book of Abstracts of the 73rd Annual Meeting of the European Federation of Animal Science, 2022, pp. 164 - 164 (atti di: 73rd Annual Meeting of the European Federation of Animal Science, Porto, 5 – 9 September, 2022) [Abstract]
Casadio R.; Martelli P.L.; Savojardo C., Machine learning solutions for predicting protein–protein interactions, «WILEY INTERDISCIPLINARY REVIEWS. COMPUTATIONAL MOLECULAR SCIENCE», 2022, 12, pp. 1 - 21 [Scientific article]
Castrense Savojardo, Davide Baldazzi, Giulia Babbi, Pier Luigi Martelli, Rita Casadio, Mapping human disease-associated enzymes into Reactome allows characterization of disease groups and their interactions, «SCIENTIFIC REPORTS», 2022, 12, Article number: 17963 , pp. 1 - 10 [Scientific article]Open Access
Babbi, Giulia; Savojardo, Castrense; Baldazzi, Davide; Martelli, Pier Luigi; Casadio, Rita, Pathogenic variation types in human genes relate to diseases through Pfam and InterPro mapping, «FRONTIERS IN MOLECULAR BIOSCIENCES», 2022, 9, Article number: 966927 , pp. 1 - 12 [Scientific article]Open Access
Marchetti, Laura; Nifosì, Riccardo; Martelli, Pier Luigi; Da Pozzo, Eleonora; Cappello, Valentina; Banterle, Francesco; Trincavelli, Maria Letizia; Martini, Claudia; D'Elia, Massimo, Quantum computing algorithms: getting closer to critical problems in computational biology, «BRIEFINGS IN BIOINFORMATICS», 2022, 23, Article number: bbac437 , pp. 1 - 15 [Scientific article]
Palladino Giorgia, Scicchitano Daniel, Brigidi Patrizia, Galata Valentina, Laczny Cedric, Halder Rashi, Wilmes Paul, Trevisi Paolo, Luise Diana, De Cesare, Manfreda Gerardo, Martelli Pierluigi, Babbi Giulia, Turroni Silvia, Candela Marco, Rampelli Simone, Resistome and xenobiome temporal dynamics in poultry and swine production chains: the CIRCLES project, in: FEMS Conference on Microbiology, 2022(atti di: FEMS Conference on Microbiology, Belgrade, Serbia, 30 June - 2 July 2022) [Poster]
Scicchitano Daniel, Palladino Giorgia, Brigidi Patrizia, Laczny Cedric, Halder Rashi, De Cesare, Manfreda Gerardo, Martelli Pierluigi, Babbi Giulia, Turroni Silvia, Candela Marco, Rampelli Simone, Resistome and xenobiome temporal dynamics in poultry production chain: the CIRCLES project, in: 10th International Yakult Symposium, 13-14 October 2022, Milan (Italy), 2022, pp. 0 - 1 (atti di: 10th International Yakult Symposium, Milan, Italy, 13-14 October 2022) [Contribution to conference proceedings]
