Margherita Nannini, Giuseppe Tarantino , Valentina Indio, Gloria Ravegnini, Annalisa Astolfi, Milena Urbini, Antonio De Leo, Donatella Santini, Claudio Ceccarelli, Elisa Gruppioni, Annalisa Altimari, Paolo Castellucci, Stefano Fanti, Valerio Di Scioscio, Maristella Saponara, Lidia Gatto, Andrea Pession, Pier Luigi Martelli, Rita Casadio, Maria Abbondanza Pantaleo, Molecular modelling evaluation of exon 18 His845_Asn848delinsPro pDGFRα mutation in a metastatic GIST patient responding to imatinib, «SCIENTIFIC REPORTS», 2019, 9, pp. 2172 - 2178 [Scientific article]Open Access
Montanucci, Ludovica; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita; Fariselli, Piero, On the biases in predictions of protein stability changes upon variations: the INPS test case, «BIOINFORMATICS», 2019, 35, pp. 2525 - 2527 [Scientific article]
Monzon A.M.; Carraro M.; Chiricosta L.; Reggiani F.; Han J.; Ozturk K.; Wang Y.; Miller M.; Bromberg Y.; Capriotti E.; Savojardo C.; Babbi G.; Martelli P.L.; Casadio R.; Katsonis P.; Lichtarge O.; Carter H.; Kousi M.; Katsanis N.; Andreoletti G.; Moult J.; Brenner S.E.; Ferrari C.; Leonardi E.; Tosatto S.C.E., Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI-5, «HUMAN MUTATION», 2019, 40, pp. 1474 - 1485 [Scientific article]
Babbi G, Martelli P, Casadio R, PhenPath: A tool for characterizing biological functions underlying different phenotypes, «BMC GENOMICS», 2019, 20, Article number: 548 , pp. 1 - 11 [Scientific article]Open Access
McInnes, Gregory; Daneshjou, Roxana; Katsonis, Panagiostis; Lichtarge, Olivier; Srinivasan, Raj G; Rana, Sadhna; Radivojac, Predrag; Mooney, Sean D; Pagel, Kymberleigh A; Stamboulian, Moses; Jiang, Yuxiang; Capriotti, Emidio; Wang, Yanran; Bromberg, Yana; Bovo, Samuele; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita; Pal, Lipika R; Moult, John; Brenner, Steven; Altman, Russ, Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges, «HUMAN MUTATION», 2019, 40, pp. 1314 - 1320 [Scientific article]
Zhou N.; Jiang Y.; Bergquist T.R.; Lee A.J.; Kacsoh B.Z.; Crocker A.W.; Lewis K.A.; Georghiou G.; Nguyen H.N.; Hamid M.N.; Davis L.; Dogan T.; Atalay V.; Rifaioglu A.S.; Dalklran A.; Cetin Atalay R.; Zhang C.; Hurto R.L.; Freddolino P.L.; Zhang Y.; Bhat P.; Supek F.; Fernandez J.M.; Gemovic B.; Perovic V.R.; Davidovic R.S.; Sumonja N.; Veljkovic N.; Asgari E.; Mofrad M.R.K.; Profiti G.; Savojardo C.; Martelli P.L.; Casadio R.; Boecker F.; Schoof H.; Kahanda I.; Thurlby N.; McHardy A.C.; Renaux A.; Saidi R.; Gough J.; Freitas A.A.; Antczak M.; Fabris F.; Wass M.N.; Hou J.; Cheng J.; Wang Z.; Romero A.E.; Paccanaro A.; Yang H.; Goldberg T.; Zhao C.; Holm L.; Toronen P.; Medlar A.J.; Zosa E.; Borukhov I.; Novikov I.; Wilkins A.; Lichtarge O.; Chi P.-H.; Tseng W.-C.; Linial M.; Rose P.W.; Dessimoz C.; Vidulin V.; Dzeroski S.; Sillitoe I.; Das S.; Lees J.G.; Jones D.T.; Wan C.; Cozzetto D.; Fa R.; Torres M.; Warwick Vesztrocy A.; Rodriguez J.M.; Tress M.L.; Frasca M.; Notaro M.; Grossi G.; Petrini A.; Re M.; Valentini G.; Mesiti M.; Roche D.B.; Reeb J.; Ritchie D.W.; Aridhi S.; Alborzi S.Z.; Devignes M.-D.; Koo D.C.E.; Bonneau R.; Gligorijevic V.; Barot M.; Fang H.; Toppo S.; Lavezzo E.; Falda M.; Berselli M.; Tosatto S.C.E.; Carraro M.; Piovesan D.; Ur Rehman H.; Mao Q.; Zhang S.; Vucetic S.; Black G.S.; Jo D.; Suh E.; Dayton J.B.; Larsen D.J.; Omdahl A.R.; McGuffin L.J.; Brackenridge D.A.; Babbitt P.C.; Yunes J.M.; Fontana P.; Zhang F.; Zhu S.; You R.; Zhang Z.; Dai S.; Yao S.; Tian W.; Cao R.; Chandler C.; Amezola M.; Johnson D.; Chang J.-M.; Liao W.-H.; Liu Y.-W.; Pascarelli S.; Frank Y.; Hoehndorf R.; Kulmanov M.; Boudellioua I.; Politano G.; Di Carlo S.; Benso A.; Hakala K.; Ginter F.; Mehryary F.; Kaewphan S.; Bjorne J.; Moen H.; Tolvanen M.E.E.; Salakoski T.; Kihara D.; Jain A.; Smuc T.; Altenhoff A.; Ben-Hur A.; Rost B.; Brenner S.E.; Orengo C.A.; Jeffery C.J.; Bosco G.; Hogan D.A.; Martin M.J.; O'Donovan C.; Mooney S.D.; Greene C.S.; Radivojac P.; Friedberg I., The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens, «GENOME BIOLOGY», 2019, 20, Article number: 244 , pp. 1 - 23 [Scientific article]Open Access
Savojardo, Castrense; Martelli, Pier Luigi*; Fariselli, Piero; Profiti, Giuseppe; Casadio, Rita, BUSCA: An integrative web server to predict subcellular localization of proteins, «NUCLEIC ACIDS RESEARCH», 2018, 46, pp. W459 - W466 [Scientific article]Open Access
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Profiti, Giuseppe; Casadio, Rita, BUSCA is a web server for predicting subcellular localization of proteins, 2018. [Software]
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, DeepSig: deep learning improves signal peptide detection in proteins, «BIOINFORMATICS», 2018, 34, pp. 1690 - 1696 [Scientific article]Open Access
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, DeepSig is a software package and web server to predict signal peptides in proteins, 2018. [Software]
Martelli PL, Profiti G, Casadio R, Savojardo C, Integrating ELIXIR Italy with ELIXIR Interoperability platform activities, in: F1000 Research, 2018(atti di: ELIXIR All-hands meeting, Berlino, 4-7 giugno 2018) [Poster]Open Access
Pier Luigi Martelli, Castrense Savojardo, Giuseppe Profiti, Rita Casadio, Transmembrane Domain Prediction, in: Encyclopedia of Bioinformatics and Computational Biology, Oxford, Academic Press, 2018, pp. 46 - 52 [Chapter or essay]
Giulia Babbi, Pier Luigi Martelli, Giuseppe Profiti, Samuele Bovo, Castrense Savojardo, Rita Casadio, Analysing the relations among genes and polygenic diseases with eDGAR, in: F1000Research, 2017(atti di: NGS 2017, Barcellona (Spain), 3-4-5 Aprile 2017) [Poster]
Xu, Qifang; Tang, Qingling; Katsonis, Panagiotis; Lichtarge, Olivier; Jones, David; Bovo, Samuele; Babbi, Giulia; Martelli, Pier L.; Casadio, Rita; Lee, Gyu Rie; Seok, Chaok; Fenton, Aron W; Dunbrack, Roland L., Benchmarking predictions of allostery in liver pyruvate kinase in CAGI4, «HUMAN MUTATION», 2017, 38, pp. 1123 - 1131 [Scientific article]
Capriotti, Emidio; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, Blind Prediction of Deleterious Amino Acid Variations with SNPs&GO, «HUMAN MUTATION», 2017, TBA, pp. 1 - 22 [Scientific article]
