Giorgi, Federico M.; Lopez, Gonzalo; Woo, Jung H.; Bisikirska, Brygida; Califano, Andrea; Bansal, Mukesh, Inferring protein modulation from gene expression data using conditional mutual information, «PLOS ONE», 2014, 9, Article number: e109569 , pp. 569 - 578 [Scientific article]
Tosetti, Roberta; Tardelli, Francesca; Tadiello, Alice; Zaffalon, Valerio; Giorgi, Federico M.; Guidi, Lucia; Trainotti, Livio; Bonghi, Claudio; Tonutti, Pietro*, Molecular and biochemical responses to wounding in mesocarp of ripe peach (Prunus persica L. Batsch) fruit, «POSTHARVEST BIOLOGY AND TECHNOLOGY», 2014, 90, pp. 40 - 51 [Scientific article]
Del Fabbro, Cristian; Scalabrin, Simone; Morgante, Michele; Giorgi, Federico M., An extensive evaluation of read trimming effects on illumina NGS data analysis, «PLOS ONE», 2013, 8, Article number: e85024 , pp. 1932 - 1943 [Scientific article]
Giorgi, Federico M.; Del Fabbro, Cristian; Licausi, Francesco, Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana, «BIOINFORMATICS», 2013, 29, pp. 717 - 724 [Scientific article]
Li, Jing-Woei*; Bolser, Dan; Manske, Magnus; Giorgi, Federico Manuel; Vyahhi, Nikolay; Usadel, Björn; Clavijo, Bernardo J.; Chan, Ting-Fung; Wong, Nathalie; Zerbino, Daniel; Schneider, Maria Victoria, The NGS wikibook: A dynamic collaborative online training effort with long-termsustainability, «BRIEFINGS IN BIOINFORMATICS», 2013, 14, Article number: bbt045 , pp. 548 - 555 [Scientific article]
Lee, Yang P.; Giorgi, Federico M.; Lohse, Marc; Kvederaviciute, Kotryna; Klages, Sven; Usadel, Björn; Meskiene, Irute; Reinhardt, Richard; Hincha, Dirk K.*, Transcriptome sequencing and microarray design for functional genomics in the extremophile arabidopsis relative thellungiella salsuginea (eutrema salsugineum), «BMC GENOMICS», 2013, 14, Article number: 793 , pp. 1 - 19 [Scientific article]Open Access
Giorgi F,, Expression-based reverse engineering of plant transcriptional networks, Saarbrücken, LAP LAMBERT Academic Publishing, 2012, pp. 140 . [Research monograph]
Santaniello, A.; Giorgi, F.M.; Tommaso, D. Di; Tommaso, G. Di; Piaggesi, A.; Perata, P., Genomic approaches to unveil the physiological pathways activated in Arabidopsis treated with plant-derived raw extracts, «ACTA HORTICULTURAE», 2012, 1009, pp. 161 - 174 [Scientific article]
Vasilevski, Aleksandar; Giorgi, Federico M.; Bertinetti, Luca; Usadel, Björn, LASSO modeling of the Arabidopsis thaliana seed/seedling transcriptome: A model case for detection of novel mucilage and pectin metabolism genes, «MOLECULAR BIOSYSTEMS», 2012, 8, pp. 2566 - 2574 [Scientific article]
Paparelli, Eleonora; Gonzali, Silvia; Parlanti, Sandro; Novi, Giacomo; Giorgi, Federico M.; Licausi, Francesco; Kosmacz, Monika; Feil, Regina; Lunn, John E.; Brust, Henrike; van Dongen, Joost T.; Steup, Martin; Perata, Pierdomenico*, Misexpression of a chloroplast aspartyl protease leads to severe growth defects and alters carbohydrate metabolism in arabidopsis, «PLANT PHYSIOLOGY», 2012, 160, pp. 1237 - 1250 [Scientific article]
Licausi, Francesco; Giorgi, Federico Manuel; Schmälzlin, Elmar; Usadel, Björn; Perata, Pierdomenico; Van Dongen, Joost Thomas; Geigenberger, Peter, HRE-type genes are regulated by growth-related changes in internal oxygen concentrations during the normal development of potato (solanum tuberosum) tubers, «PLANT AND CELL PHYSIOLOGY», 2011, 52, pp. 1957 - 1972 [Scientific article]
Licausi, Francesco; Kosmacz, Monika; Weits, Daan A.; Giuntoli, Beatrice; Giorgi, Federico M.; Voesenek, Laurentius A. C. J.; Perata, Pierdomenico; Van Dongen, Joost T., Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization, «NATURE», 2011, 479, pp. 419 - 422 [Scientific article]
Mutwil, Marek; Klie, Sebastian; Tohge, Takayuki; Giorgi, Federico M.; Wilkins, Olivia; Campbell, Malcolm M.; Fernie, Alisdair R.; Usadel, Björn; Nikoloski, Zoran; Persson, Staffan*, PlaNet: Combined sequence and expression comparisons across plant networks derived from seven species, «PLANT CELL», 2011, 23, pp. 895 - 910 [Scientific article]
Ryngajllo, Malgorzata; Childs, Liam; Lohse, Marc; Giorgi, Federico M.; Lude, Anja; Selbig, Joachim; Usadel, Björn*, SLocX: Predicting subcellular localization of Arabidopsis proteins leveraging gene expression data, «FRONTIERS IN PLANT SCIENCE», 2011, 2, Article number: 43 , pp. 96 - 106 [Scientific article]Open Access
Giorgi, Federico M.; Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern*, Algorithm-driven Artifacts in median polish summarization of Microarray data, «BMC BIOINFORMATICS», 2010, 11, Article number: 553 , pp. 1 - 12 [Scientific article]Open Access
