Foto del docente

Federico Manuel Giorgi

Associate Professor

Department of Pharmacy and Biotechnology

Academic discipline: BIO/18 Genetics

Publications

Mercatelli D.; Ray F.; Giorgi F.M., Pan-cancer and single-cell modelling of genomic alterations through gene expression, «FRONTIERS IN GENETICS», 2019, 10, Article number: 671 , pp. 671 - 683 [Scientific article]Open Access

Giorgio MIlazzo, Daniele Mercatelli, Giovanni Perini, Federico M. Giorgi, Unveiling Early Differentiation Induced by Histone Deacetylase Inhibitors in Neuroblastoma Cell Lines: A Single-Cell Transcriptomics Approach, in: PEDIATRIC BLOOD & CANCER, 2019, 66, pp. 324 - 325 (atti di: 51st CONGRESS OF THE INTERNATIONAL SOCIETY OF PAEDIATRIC ONCOLOGY (SIOP), Lione, 23-26/19/2019) [Abstract]

Holding, Andrew N.; Giorgi, Federico M.; Donnelly, Amanda; Cullen, Amy E.; Nagarajan, Sankari; Selth, Luke A.; Markowetz, Florian, VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer, «GENOME BIOLOGY», 2019, 20, Article number: 91 , pp. 1 - 16 [Scientific article]Open Access

Cesana, Marcella; Guo, Michael H.; Cacchiarelli, Davide; Wahlster, Lara; Barragan, Jessica; Doulatov, Sergei; Vo, Linda T.; Salvatori, Beatrice; Trapnell, Cole; Clement, Kendell; Cahan, Patrick; Tsanov, Kaloyan M.; Sousa, Patricia M.; Tazon-Vega, Barbara; Bolondi, Adriano; Giorgi, Federico M.; Califano, Andrea; Rinn, John L.; Meissner, Alexander; Hirschhorn, Joel N.; Daley, George Q., A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development, «CELL STEM CELL», 2018, 22, pp. 575 - 588 [Scientific article]Open Access

Giuntoli, Beatrice; Shukla, Vinay; Maggiorelli, Federica; Giorgi, Federico M.; Lombardi, Lara; Perata, Pierdomenico; Licausi, Francesco, Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana, «PLANT, CELL AND ENVIRONMENT», 2017, 40, pp. 2333 - 2346 [Scientific article]

Sibout, Richard*; Proost, Sebastian; Hansen, Bjoern Oest; Vaid, Neha; Giorgi, Federico M.; Ho-Yue-Kuang, Severine; Legée, Frédéric; Cézart, Laurent; Bouchabké-Coussa, Oumaya; Soulhat, Camille; Provart, Nicholas; Pasha, Asher; Le Bris, Philippe; Roujol, David; Hofte, Herman; Jamet, Elisabeth; Lapierre, Catherine; Persson, Staffan; Mutwil, Marek, Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon, «NEW PHYTOLOGIST», 2017, 215, pp. 1009 - 1025 [Scientific article]

Lachmann, Alexander; Giorgi, Federico M.; Lopez, Gonzalo; Califano, Andrea*, ARACNe-AP: Gene network reverse engineering through adaptive partitioning inference of mutual information, «BIOINFORMATICS», 2016, 32, pp. 2233 - 2235 [Scientific article]Open Access

Giorgi, Federico M; Lopez, Gonzalo; Woo, Jung H; Bisikirska, Brygida; Califano, Andrea; Bansal, Mukesh, Correction: Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information, «PLOS ONE», 2016, 11, pp. 42 - 54 [Scientific article]

Lachmann, Alexander; Giorgi, Federico M.; Alvarez, Mariano J.; Califano, Andrea, Detection and removal of spatial bias in multiwell assays, «BIOINFORMATICS», 2016, 32, pp. 1959 - 1965 [Scientific article]

Alvarez, Mariano J.; Shen, Yao; Giorgi, Federico M; Lachmann, Alexander; Ding, B Belinda; Hilda Ye, B.; Califano, Andrea, Functional characterization of somatic mutations in cancer using network-based inference of protein activity, «NATURE GENETICS», 2016, 48, pp. 838 - 847 [Scientific article]

Sepulveda, Jorge L.; Gutierrez-Pajares, Jorge L.; Luna, Aesis; Yao, Yuan; Tobias, John W.; Thomas, Steven; Woo, Yanghee; Giorgi, Federico; Komissarova, Elena V.; Califano, Andrea; Wang, Timothy C.; Sepulveda, Antonia R.*, High-definition CpG methylation of novel genes in gastric carcinogenesis identified by next-generation sequencing, «MODERN PATHOLOGY», 2016, 29, pp. 182 - 193 [Scientific article]

Hughes, James M.; Salvatori, Beatrice; Giorgi, Federico M.; Bozzoni, Irene; Fatica, Alessandro*, CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia, «JOURNAL OF HEMATOLOGY & ONCOLOGY», 2014, 7, Article number: 69 , pp. 69 - 76 [Scientific article]

Giorgi, Federico M.; Lopez, Gonzalo; Woo, Jung H.; Bisikirska, Brygida; Califano, Andrea; Bansal, Mukesh, Inferring protein modulation from gene expression data using conditional mutual information, «PLOS ONE», 2014, 9, Article number: e109569 , pp. 569 - 578 [Scientific article]

Tosetti, Roberta; Tardelli, Francesca; Tadiello, Alice; Zaffalon, Valerio; Giorgi, Federico M.; Guidi, Lucia; Trainotti, Livio; Bonghi, Claudio; Tonutti, Pietro*, Molecular and biochemical responses to wounding in mesocarp of ripe peach (Prunus persica L. Batsch) fruit, «POSTHARVEST BIOLOGY AND TECHNOLOGY», 2014, 90, pp. 40 - 51 [Scientific article]

Del Fabbro, Cristian; Scalabrin, Simone; Morgante, Michele; Giorgi, Federico M., An extensive evaluation of read trimming effects on illumina NGS data analysis, «PLOS ONE», 2013, 8, Article number: e85024 , pp. 1932 - 1943 [Scientific article]