Gardini, Erika; Giorgi, Federico M; Decherchi, Sergio; Cavalli, Andrea, Spathial: an R package for the evolutionary analysis of biological data, «BIOINFORMATICS», 2020, 36, pp. 4664-4667 - 4667 [Scientific article]Open Access
Mercatelli D.; Bortolotti M.; Giorgi F.M., Transcriptional network inference and master regulator analysis of the response to ribosome-inactivating proteins in leukemia cells, «TOXICOLOGY», 2020, 441, Article number: 152531 , pp. 1 - 9 [Scientific article]
Laura D. Gamble, Stefania Purgato, Jayne Murray, Lin Xiao, Denise M. T. Yu, Kimberley M. Hanssen, Federico M. Giorgi, Daniel R. Carter, Andrew J. Gifford, Emanuele Valli, Giorgio Milazzo, Alvin Kamili, Chelsea Mayoh, Bing Liu, Georgina Eden, Sara Sarraf, Sophie Allan, Simone Di Giacomo, Claudia L. Flemming, Amanda J. Russell, Belamy B. Cheung, Andre Oberthuer, Wendy B. London, Matthias Fischer, Toby N. Trahair, Jamie I. Fletcher, Glenn M. Marshall, David S. Ziegler, Michael D. Hogarty, Mark R. Burns, Giovanni Perini, Murray D. Norris, and Michelle Haber, Inhibition of polyamine synthesis and uptake reduces tumor progression and prolongs survival in mouse models of neuroblastoma, «SCIENCE TRANSLATIONAL MEDICINE», 2019, 11, pp. 1 - 12 [Scientific article]
Mercatelli D.; Ray F.; Giorgi F.M., Pan-cancer and single-cell modelling of genomic alterations through gene expression, «FRONTIERS IN GENETICS», 2019, 10, Article number: 671 , pp. 671 - 683 [Scientific article]Open Access
Giorgio MIlazzo, Daniele Mercatelli, Giovanni Perini, Federico M. Giorgi, Unveiling Early Differentiation Induced by Histone Deacetylase Inhibitors in Neuroblastoma Cell Lines: A Single-Cell Transcriptomics Approach, in: PEDIATRIC BLOOD & CANCER, 2019, 66, pp. 324 - 325 (atti di: 51st CONGRESS OF THE INTERNATIONAL SOCIETY OF PAEDIATRIC ONCOLOGY (SIOP), Lione, 23-26/19/2019) [Abstract]
Holding, Andrew N.; Giorgi, Federico M.; Donnelly, Amanda; Cullen, Amy E.; Nagarajan, Sankari; Selth, Luke A.; Markowetz, Florian, VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer, «GENOME BIOLOGY», 2019, 20, Article number: 91 , pp. 1 - 16 [Scientific article]Open Access
Cesana, Marcella; Guo, Michael H.; Cacchiarelli, Davide; Wahlster, Lara; Barragan, Jessica; Doulatov, Sergei; Vo, Linda T.; Salvatori, Beatrice; Trapnell, Cole; Clement, Kendell; Cahan, Patrick; Tsanov, Kaloyan M.; Sousa, Patricia M.; Tazon-Vega, Barbara; Bolondi, Adriano; Giorgi, Federico M.; Califano, Andrea; Rinn, John L.; Meissner, Alexander; Hirschhorn, Joel N.; Daley, George Q., A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development, «CELL STEM CELL», 2018, 22, pp. 575 - 588 [Scientific article]Open Access
Giuntoli, Beatrice; Shukla, Vinay; Maggiorelli, Federica; Giorgi, Federico M.; Lombardi, Lara; Perata, Pierdomenico; Licausi, Francesco, Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana, «PLANT, CELL AND ENVIRONMENT», 2017, 40, pp. 2333 - 2346 [Scientific article]
Sibout, Richard*; Proost, Sebastian; Hansen, Bjoern Oest; Vaid, Neha; Giorgi, Federico M.; Ho-Yue-Kuang, Severine; Legée, Frédéric; Cézart, Laurent; Bouchabké-Coussa, Oumaya; Soulhat, Camille; Provart, Nicholas; Pasha, Asher; Le Bris, Philippe; Roujol, David; Hofte, Herman; Jamet, Elisabeth; Lapierre, Catherine; Persson, Staffan; Mutwil, Marek, Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon, «NEW PHYTOLOGIST», 2017, 215, pp. 1009 - 1025 [Scientific article]
Lachmann, Alexander; Giorgi, Federico M.; Lopez, Gonzalo; Califano, Andrea*, ARACNe-AP: Gene network reverse engineering through adaptive partitioning inference of mutual information, «BIOINFORMATICS», 2016, 32, pp. 2233 - 2235 [Scientific article]Open Access
Giorgi, Federico M; Lopez, Gonzalo; Woo, Jung H; Bisikirska, Brygida; Califano, Andrea; Bansal, Mukesh, Correction: Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information, «PLOS ONE», 2016, 11, pp. 42 - 54 [Scientific article]
Lachmann, Alexander; Giorgi, Federico M.; Alvarez, Mariano J.; Califano, Andrea, Detection and removal of spatial bias in multiwell assays, «BIOINFORMATICS», 2016, 32, pp. 1959 - 1965 [Scientific article]
Alvarez, Mariano J.; Shen, Yao; Giorgi, Federico M; Lachmann, Alexander; Ding, B Belinda; Hilda Ye, B.; Califano, Andrea, Functional characterization of somatic mutations in cancer using network-based inference of protein activity, «NATURE GENETICS», 2016, 48, pp. 838 - 847 [Scientific article]
Sepulveda, Jorge L.; Gutierrez-Pajares, Jorge L.; Luna, Aesis; Yao, Yuan; Tobias, John W.; Thomas, Steven; Woo, Yanghee; Giorgi, Federico; Komissarova, Elena V.; Califano, Andrea; Wang, Timothy C.; Sepulveda, Antonia R.*, High-definition CpG methylation of novel genes in gastric carcinogenesis identified by next-generation sequencing, «MODERN PATHOLOGY», 2016, 29, pp. 182 - 193 [Scientific article]
Hughes, James M.; Salvatori, Beatrice; Giorgi, Federico M.; Bozzoni, Irene; Fatica, Alessandro*, CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia, «JOURNAL OF HEMATOLOGY & ONCOLOGY», 2014, 7, Article number: 69 , pp. 69 - 76 [Scientific article]
