Foto del docente

Emanuele Paci

Associate Professor

Department of Physics and Astronomy "Augusto Righi"

Academic discipline: FIS/07 Applied Physics


Jonathan D Goult; Daniel C L Van; Yasmin V Taylor; Patrick G Inns; Renata Kaminska; Martin Vesely; Colin Kleanthous; Emanuele Paci, Structural constraints of pyocin S2 import through the ferripyoverdine receptor FpvAI, «PNAS NEXUS», 2024, 3, pp. 1 - 11 [Scientific article]

Bruce A.J.E.; Paci E.; Brockwell D.J., Collagen-like Motifs of SasG: A Novel Fold for Protein Mechanical Strength, «JOURNAL OF MOLECULAR BIOLOGY», 2023, 435, Article number: 167980 , pp. 1 - 15 [Scientific article]

Porkolab V.; Lepsik M.; Ordanini S.; St John A.; Le Roy A.; Thepaut M.; Paci E.; Ebel C.; Bernardi A.; Fieschi F., Powerful Avidity with a Limited Valency for Virus-Attachment Blockers on DC-SIGN: Combining Chelation and Statistical Rebinding with Structural Plasticity of the Receptor, «ACS CENTRAL SCIENCE», 2023, 9, pp. 709 - 718 [Scientific article]

Istvan Redl; Carlo Fisicaro; Oliver Dutton; Falk Hoffmann; Louie Henderson; Benjamin M.J. Owens; Matthew Heberling; Emanuele Paci; Kamil Tamiola, ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers, «NAR GENOMICS AND BIOINFORMATICS», 2022, 1, pp. 1 - 14 [Scientific article]

Stofella M.; Skinner S.P.; Sobott F.; Houwing-Duistermaat J.; Paci E., High-Resolution Hydrogen-Deuterium Protection Factors from Sparse Mass Spectrometry Data Validated by Nuclear Magnetic Resonance Measurements, «JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY», 2022, 33, pp. 813 - 822 [Scientific article]Open Access

Paci E.; Ross J.F., Computational methods to predict the mutational landscape of the spike protein, «BIOPHYSICAL JOURNAL», 2021, 120, pp. 2763 - 2765 [Scientific article]

Skinner S.P.; Follmer A.H.; Ubbink M.; Poulos T.L.; Houwing-Duistermaat J.J.; Paci E., Partial Opening of Cytochrome P450cam (CYP101A1) Is Driven by Allostery and Putidaredoxin Binding, «BIOCHEMISTRY», 2021, 60, pp. 2932 - 2942 [Scientific article]

Whelan F.; Lafita A.; Gilburt J.; Degut C.; Griffiths S.C.; Jenkins H.T.; St John A.N.; Paci E.; Moir J.W.B.; Plevin M.J.; Baumann C.G.; Bateman A.; Potts J.R., Periscope Proteins are variable-length regulators of bacterial cell surface interactions, «PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA», 2021, 118, Article number: e2101349118 , pp. 1 - 2 [Scientific article]Open Access

Batchelor M.; Papachristos K.; Stofella M.; Yew Z.T.; Paci E., Protein mechanics probed using simple molecular models, «BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS», 2020, 1864, Article number: 129613 , pp. 1 - 9 [Scientific article]Open Access

Hao Y.; England J.P.; Bellucci L.; Paci E.; Hodges H.C.; Taylor S.S.; Maillard R.A., Activation of PKA via asymmetric allosteric coupling of structurally conserved cyclic nucleotide binding domains, «NATURE COMMUNICATIONS», 2019, 10, Article number: 3984 , pp. 1 - 10 [Scientific article]Open Access

Wodak, Shoshana J; Paci, Emanuele; Dokholyan, Nikolay V; Berezovsky, Igor N; Horovitz, Amnon; Li, Jing; Hilser, Vincent J; Bahar, Ivet; Karanicolas, John; Stock, Gerhard; Hamm, Peter; Stote, Roland H; Eberhardt, Jerome; Chebaro, Yassmine; Dejaegere, Annick; Cecchini, Marco; Changeux, Jean-Pierre; Bolhuis, Peter G; Vreede, Jocelyne; Faccioli, Pietro; Orioli, Simone; Ravasio, Riccardo; Yan, Le; Brito, Carolina; Wyart, Matthieu; Gkeka, Paraskevi; Rivalta, Ivan; Palermo, Giulia; McCammon, J Andrew; Panecka-Hofman, Joanna; Wade, Rebecca C; Di Pizio, Antonella; Niv, Masha Y; Nussinov, Ruth; Tsai, Chung-Jung; Jang, Hyunbum; Padhorny, Dzmitry; Kozakov, Dima; McLeish, Tom, Allostery in Its Many Disguises: From Theory to Applications, «STRUCTURE», 2019, 27, pp. 566 - 578 [Scientific article]

Radom F.; Paci E.; Pluckthun A., Computational Modeling of Designed Ankyrin Repeat Protein Complexes with Their Targets, «JOURNAL OF MOLECULAR BIOLOGY», 2019, 431, pp. 2852 - 2868 [Scientific article]

Whelan F.; Lafita A.; Griffiths S.C.; Cooper R.E.M.; Whittingham J.L.; Turkenburg J.P.; Manfield I.W.; St John A.N.; Paci E.; Bateman A.; Potts J.R., Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection, «PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA», 2019, 116, pp. 26540 - 26548 [Scientific article]

Ross J.F.; Wildsmith G.C.; Johnson M.; Hurdiss D.L.; Hollingsworth K.; Thompson R.F.; Mosayebi M.; Trinh C.H.; Paci E.; Pearson A.R.; Webb M.E.; Turnbull W.B., Directed Assembly of Homopentameric Cholera Toxin B-Subunit Proteins into Higher-Order Structures Using Coiled-Coil Appendages, «JOURNAL OF THE AMERICAN CHEMICAL SOCIETY», 2019, 141, pp. 5211 - 5219 [Scientific article]

Batchelor M.; Wolny M.; Baker E.G.; Paci E.; Kalverda A.P.; Peckham M., Dynamic ion pair behavior stabilizes single alpha-helices in proteins, «THE JOURNAL OF BIOLOGICAL CHEMISTRY», 2019, 294, pp. 3219 - 3234 [Scientific article]Open Access

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