Stofella, Michele; Seetaloo, Neeleema; St John, Alexander N.; Paci, Emanuele; Phillips, Jonathan J.; Sobott, Frank, Recalibrating Protection Factors Using Millisecond Hydrogen/Deuterium Exchange Mass Spectrometry, «ANALYTICAL CHEMISTRY», 2025, 97, pp. 2648 - 2657 [Scientific article]
Hwang, Wonmuk; Austin, Steven L.; Blondel, Arnaud; Boittier, Eric D.; Boresch, Stefan; Buck, Matthias; Buckner, Joshua; Caflisch, Amedeo; Chang, Hao-Ting; Cheng, Xi; Choi, Yeol Kyo; Chu, Jhih-Wei; Crowley, Michael F.; Cui, Qiang; Damjanovic, Ana; Deng, Yuqing; Devereux, Mike; Ding, Xinqiang; Feig, Michael F.; Gao, Jiali; Glowacki, David R.; Gonzales, James E.; Hamaneh, Mehdi Bagerhi; Harder, Edward D.; Hayes, Ryan L.; Huang, Jing; Huang, Yandong; Hudson, Phillip S.; Im, Wonpil; Islam, Shahidul M.; Jiang, Wei; Jones, Michael R.; Käser, Silvan; Kearns, Fiona L.; Kern, Nathan R.; Klauda, Jeffery B.; Lazaridis, Themis; Lee, Jinhyuk; Lemkul, Justin A.; Liu, Xiaorong; Luo, Yun; Mackerell, Alexander D.; Major, Dan T.; Meuwly, Markus; Nam, Kwangho; Nilsson, Lennart; Ovchinnikov, Victor; Paci, Emanuele; Park, Soohyung; Pastor, Richard W.; Pittman, Amanda R.; Post, Carol Beth; Prasad, Samarjeet; Pu, Jingzhi; Qi, Yifei; Rathinavelan, Thenmalarchelvi; Roe, Daniel R.; Roux, Benoit; Rowley, Christ, CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed, «JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL», 2024, 128, pp. 9976 - 10042 [Scientific article]Open Access
Stofella, Michele; Grimaldi, Antonio; Smit, Jochem H.; Claesen, Jürgen; Paci, Emanuele; Sobott, Frank, Computational Tools for Hydrogen–Deuterium Exchange Mass Spectrometry Data Analysis, «CHEMICAL REVIEWS», 2024, 124, pp. 12242 - 12263 [Scientific article]
Sandei, Ilaria; Gaule, Thembaninkosi; Batchelor, Matthew; Paci, Emanuele; Kim, Yi-Yeoun; Kulak, Alexander N.; Tomlinson, Darren C.; Meldrum, Fiona C., Phage display identifies Affimer proteins that direct calcium carbonate polymorph formation, «BIOMATERIALS SCIENCE», 2024, 12, pp. 5215 - 5224 [Scientific article]Open Access
D Goult, Jonathan; L Van, Daniel C; V Taylor, Yasmin; G Inns, Patrick; Kaminska, Renata; Vesely, Martin; Kleanthous, Colin; Paci, Emanuele, Structural constraints of pyocin S2 import through the ferripyoverdine receptor FpvAI, «PNAS NEXUS», 2024, 3, Article number: pgae124 , pp. 1 - 11 [Scientific article]Open Access
Au, Cheuk W.; Manfield, Iain; Webb, Michael E.; Paci, Emanuele; Turnbull, W. Bruce; Ross, James F., The Mutagenic Plasticity of the Cholera Toxin B-Subunit Surface Residues: Stability and Affinity, «TOXINS», 2024, 16, Article number: 133 , pp. 1 - 16 [Scientific article]Open Access
Bruce, A. J. E.; Paci, E.; Brockwell, D. J., Collagen-like Motifs of SasG: A Novel Fold for Protein Mechanical Strength, «JOURNAL OF MOLECULAR BIOLOGY», 2023, 435, Article number: 167980 , pp. 1 - 15 [Scientific article]Open Access
Kiss, Robert S.; Chicoine, Jarred; Khalil, Youssef; Sladek, Robert; Chen, He; Pisaturo, Alessandro; Martin, Cyril; Dale, Jessica D.; Brudenell, Tegan A.; Kamath, Archith; Kyei-Boahen, Jeffrey; Hafiane, Anouar; Daliah, Girija; Alecki, Célia; Hopes, Tayah S.; Heier, Martin; Aligianis, Irene A.; Lebrun, Jean-Jacques; Aspden, Julie; Paci, Emanuele; Kerksiek, Anja; Lütjohann, Dieter; Clayton, Peter; Wills, Jimi C.; von Kriegsheim, Alex; Nilsson, Tommy; Sheridan, Eamonn; Handley, Mark T., Comparative proximity biotinylation implicates the small GTPase RAB18 in sterol mobilization and biosynthesis, «THE JOURNAL OF BIOLOGICAL CHEMISTRY», 2023, 299, Article number: 105295 , pp. 1 - 21 [Scientific article]Open Access
Porkolab V.; Lepsik M.; Ordanini S.; St John A.; Le Roy A.; Thepaut M.; Paci E.; Ebel C.; Bernardi A.; Fieschi F., Powerful Avidity with a Limited Valency for Virus-Attachment Blockers on DC-SIGN: Combining Chelation and Statistical Rebinding with Structural Plasticity of the Receptor, «ACS CENTRAL SCIENCE», 2023, 9, pp. 709 - 718 [Scientific article]Open Access
Redl, Istvan; Fisicaro, Carlo; Dutton, Oliver; Hoffmann, Falk; Henderson, Louie; Owens, Benjamin M. J.; Heberling, Matthew; Paci, Emanuele; Tamiola, Kamil, ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers, «NAR GENOMICS AND BIOINFORMATICS», 2022, 5, Article number: lqad041 , pp. 1 - 14 [Scientific article]Open Access
Stofella M.; Skinner S.P.; Sobott F.; Houwing-Duistermaat J.; Paci E., High-Resolution Hydrogen-Deuterium Protection Factors from Sparse Mass Spectrometry Data Validated by Nuclear Magnetic Resonance Measurements, «JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY», 2022, 33, pp. 813 - 822 [Scientific article]Open Access
Paci E.; Ross J.F., Computational methods to predict the mutational landscape of the spike protein, «BIOPHYSICAL JOURNAL», 2021, 120, pp. 2763 - 2765 [Scientific article]
Skinner S.P.; Follmer A.H.; Ubbink M.; Poulos T.L.; Houwing-Duistermaat J.J.; Paci E., Partial Opening of Cytochrome P450cam (CYP101A1) Is Driven by Allostery and Putidaredoxin Binding, «BIOCHEMISTRY», 2021, 60, pp. 2932 - 2942 [Scientific article]
Whelan F.; Lafita A.; Gilburt J.; Degut C.; Griffiths S.C.; Jenkins H.T.; St John A.N.; Paci E.; Moir J.W.B.; Plevin M.J.; Baumann C.G.; Bateman A.; Potts J.R., Periscope Proteins are variable-length regulators of bacterial cell surface interactions, «PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA», 2021, 118, Article number: e2101349118 , pp. 1 - 2 [Scientific article]Open Access
Batchelor M.; Papachristos K.; Stofella M.; Yew Z.T.; Paci E., Protein mechanics probed using simple molecular models, «BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS», 2020, 1864, Article number: 129613 , pp. 1 - 9 [Scientific article]Open Access
