Foto del docente

Emanuele Paci

Associate Professor

Department of Physics and Astronomy "Augusto Righi"

Academic discipline: FIS/07 Applied Physics

Publications

Bellucci L.; Corni S.; Di Felice R.; Paci E., The Structure of Neuronal Calcium Sensor-1 in Solution Revealed by Molecular Dynamics Simulations, «PLOS ONE», 2013, 8, Article number: e74383 , pp. e74383 - 10 [Scientific article]

Shalashilin D.V.; Beddard G.S.; Paci E.; Glowacki D.R., Peptide kinetics from picoseconds to microseconds using boxed molecular dynamics: Power law rate coefficients in cyclisation reactions, «THE JOURNAL OF CHEMICAL PHYSICS», 2012, 137, Article number: 165102 , pp. 165102 - 165110 [Scientific article]

Ikeda-Kobayashi A.; Taniguchi Y.; Brockwell D.J.; Paci E.; Kawakami M., Prying open single GroES Ring complexes by force reveals cooperativity across domains, «BIOPHYSICAL JOURNAL», 2012, 102, pp. 1961 - 1968 [Scientific article]

Yew Z.T.; Paci E., Simulation Studies of Force-Induced Unfolding, in: Comprehensive Biophysics, Oxford, Academic Press, 2012, pp. 138 - 147 [Chapter or essay]

Paci E., Using models to design new bioinspired materials, «BIOPHYSICAL JOURNAL», 2012, 103, pp. 1814 - 1815 [Scientific article]

Glowacki D.R.; Paci E.; Shalashilin D.V., Boxed molecular dynamics: Decorrelation time scales and the kinetic master equation, «JOURNAL OF CHEMICAL THEORY AND COMPUTATION», 2011, 7, pp. 1244 - 1252 [Scientific article]

Ricchiuto P.; Brukhno A.V.; Paci E.; Auer S., Communication: Conformation state diagram of polypeptides: A chain length induced α - β transition, «THE JOURNAL OF CHEMICAL PHYSICS», 2011, 135, Article number: 061101 , pp. 061101 - 061110 [Scientific article]

Yew Z.T.; Olmsted P.D.; Paci E., Free Energy Landscapes of Proteins: Insights from Mechanical Probes, in: Single-Molecule Biophysics: Experiment and Theory, Advances in Chemical Physics, New York, John Wiley & Sons, Inc., 2011, pp. 395 - 417 [Chapter or essay]

Schlierf M.; Yew Z.T.; Rief M.; Paci E., Complex unfolding kinetics of single-domain proteins in the presence of force, «BIOPHYSICAL JOURNAL», 2010, 99, pp. 1620 - 1627 [Scientific article]

Yew Z.T.; Schlierf M.; Rief M.; Paci E., Direct evidence of the multidimensionality of the free-energy landscapes of proteins revealed by mechanical probes, «PHYSICAL REVIEW E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS», 2010, 81, Article number: 031923 , pp. 1 - 10 [Scientific article]

Taniguchi Y.; Khatri B.S.; Brockwell D.J.; Paci E.; Kawakami M., Dynamics of the coiled-coil unfolding transition of myosin rod probed by dissipation force spectrum, «BIOPHYSICAL JOURNAL», 2010, 99, pp. 257 - 262 [Scientific article]

Khatri B.; Yew Z.T.; Krivov S.; McLeish T.; Paci E., Fluctuation power spectra reveal dynamical heterogeneity of peptides, «THE JOURNAL OF CHEMICAL PHYSICS», 2010, 133, Article number: 015101 , pp. 015101 - 015110 [Scientific article]

Serquera D.; Lee W.; Settanni G.; Marszalek P.E.; Paci E.; Ltzhaki L.S., Mechanical unfolding of an ankyrin repeat protein, «BIOPHYSICAL JOURNAL», 2010, 98, pp. 1294 - 1301 [Scientific article]

Allen L.R.; Paci E., Simulation of fluorescence resonance energy transfer experiments: Effect of the dyes on protein folding, «JOURNAL OF PHYSICS. CONDENSED MATTER», 2010, 22, Article number: 235103 , pp. 235103 - 235113 [Scientific article]

Mann R.J.; Nasr N.E.; Sinfield J.K.; Paci E.; Donnelly D., The major determinant of exendin-4/glucagon-like peptide 1 differential affinity at the rat glucagon-like peptide 1 receptor N-terminal domain is a hydrogen bond from SER-32 of exendin-4: RESEARCH PAPER, «BRITISH JOURNAL OF PHARMACOLOGY», 2010, 160, pp. 1973 - 1984 [Scientific article]

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