Daneshjou, Roxana; Wang, Yanran; Bromberg, Yana; Bovo, Samuele; Martelli, Pier L; Babbi, Giulia; Pietro Di, Lena; Casadio, Rita; Edwards, Matthew; Gifford, David; Jones, David T; Sundaram, Laksshman; Bhat, Rajendra Rana; Xiaolin, Li; Pal, Lipika R.; Kundu, Kunal; Yin, Yizhou; Moult, John; Jiang, Yuxiang; Pejaver, Vikas; Pagel, Kymberleigh A.; Biao, Li; Mooney, Sean D.; Radivojac, Predrag; Shah, Sohela; Carraro, Marco; Gasparini, Alessandra; Leonardi, Emanuela; Giollo, Manuel; Ferrari, Carlo; Tosatto, Silvio C E; Bachar, Eran; Azaria, Johnathan R.; Ofran, Yanay; Unger, Ron; Niroula, Abhishek; Vihinen, Mauno; Chang, Billy; Wang, Maggie H; Franke, Andre; Petersen, Britt-Sabina; Pirooznia, Mehdi; Zandi, Peter; Mccombie, Richard; Potash, James B.; Altman, Russ B.; Klein, Teri E.; Hoskins, Roger A.; Repo, Susanna; Brenner, Steven E.; Morgan, Alexander A., Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges, «HUMAN MUTATION», 2017, 38, pp. 1182 - 1192 [Scientific article]Open Access
Babbi, Giulia; Martelli, Pier Luigi; Profiti, Giuseppe; Bovo, Samuele; Savojardo, Castrense; Casadio, Rita, eDGAR: a database of Disease-Gene Associations with annotated Relationships among genes, «BMC GENOMICS», 2017, 18, Article number: 554 , pp. 25 - 64 [Scientific article]Open Access
Jiang, Yuxiang; Oron, Tal Ronnen; Clark, Wyatt T.; Bankapur, Asma R.; D’Andrea, Daniel; Lepore, Rosalba; Funk, Christopher S.; Kahanda, Indika; Verspoor, Karin M.; Ben-Hur, Asa; Koo, Da Chen Emily; Penfold-Brown, Duncan; Shasha, Dennis; Youngs, Noah; Bonneau, Richard; Lin, Alexandra; Sahraeian, Sayed M. E.; Martelli, Pier Luigi; Profiti, Giuseppe; Casadio, Rita; Cao, Renzhi; Zhong, Zhaolong; Cheng, Jianlin; Altenhoff, Adrian; Skunca, Nives; Dessimoz, Christophe; Dogan, Tunca; Hakala, Kai; Kaewphan, Suwisa; Mehryary, Farrokh; Salakoski, Tapio; Ginter, Filip; Fang, Hai; Smithers, Ben; Oates, Matt; Gough, Julian; Törönen, Petri; Koskinen, Patrik; Holm, Liisa; Chen, Ching-Tai; Hsu, Wen-Lian; Bryson, Kevin; Cozzetto, Domenico; Minneci, Federico; Jones, David T.; Chapman, Samuel; Bkc, Dukka; Khan, Ishita K.; Kihara, Daisuke; Ofer, Dan; Rappoport, Nadav; Stern, Amos; Cibrian-Uhalte, Elena; Denny, Paul; Foulger, Rebecca E.; Hieta, Reija; Legge, Duncan; Lovering, Ruth C.; Magrane, Michele;, An expanded evaluation of protein function prediction methods shows an improvement in accuracy, «GENOME BIOLOGY», 2016, 17, Article number: 184 , pp. 1 - 19 [Scientific article]Open Access
Sazzini, Marco; De Fanti, Sara; Cherubini, Anna; Quagliariello, Andrea; Profiti, Giuseppe; Martelli, Pier Luigi; Casadio, Rita; Ricci, Chiara; Campieri, Massimo; Lanzini, Alberto; Volta, Umberto; Caio, Giacomo; Franceschi, Claudio; Spisni, Enzo; Luiselli, Donata, Ancient pathogen-driven adaptation triggers increased susceptibility to non-celiac wheat sensitivity in present-day European populations, «GENES & NUTRITION», 2016, 11, pp. 1 - 11 [Scientific article]
Bovo, Samuele; DI LENA, Pietro; Martelli, PIER LUIGI; Fariselli, Piero; Casadio, Rita, From protein variations to biological processes and pathways with NET-GE, in: .Genomics and Computational Biology, Kernel Press UG (haftungsbeschränkt), 2016, pp. 1 - 2 (atti di: IWWBIO 2016, 4th International Work-Conference on Bioinformatics and Biomedical Engineering, Granada, Spain, 20-22 April 2016) [Abstract]
Linguiti, Giovanna; Antonacci, Rachele; Tasco, Gianluca; Grande, Francesco; Casadio, Rita; Massari, Serafina; Castelli, Vito; Consiglio, Arianna; Lefranc, Marie-Paule; Ciccarese, Salvatrice, Genomic and expression analyses of Tursiops truncatus T cell receptor gamma (TRG) and alpha/delta (TRA/TRD) loci reveal a similar basic public γδ repertoire in dolphin and human, «BMC GENOMICS», 2016, 17, Article number: 634 , pp. 634 - 634 [Scientific article]
Savojardo, Castrense; Fariselli, Piero; Martelli, Pier Luigi; Casadio, Rita, INPS-MD: A web server to predict stability of protein variants from sequence and structure, «BIOINFORMATICS», 2016, 32, pp. 2542 - 2544 [Scientific article]
Luca Fontanesi; Federica Di Palma; Paul Flicek; Andrew T. Smith; Carl-Gustaf Thulin; Paulo C. Alves; the Lagomorph Genomics Consortium: [..; Rita Casadio; Pier Luigi Martelli; Anisa Ribani; Giuseppina Schiavo; Valerio Joe Utzeri; ..], LaGomiCs-Lagomorph Genomics Consortium: An International Collaborative Effort for Sequencing the Genomes of an Entire Mammalian Order, «JOURNAL OF HEREDITY», 2016, 107, pp. 295 - 308 [Scientific article]
Martelli, Pier Luigi; Fariselli, Piero; Savojardo, Castrense; Babbi, Giulia; Aggazio, Francesco; Casadio, Rita, Large scale analysis of protein stability in OMIM disease related human protein variants, «BMC GENOMICS», 2016, 17, Article number: 397 , pp. 239 - 247 [Scientific article]
Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, NET-GE, 2016. [Software]
Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, NET-GE: a web-server for NETwork-based human gene enrichment, «BIOINFORMATICS», 2016, 32, pp. 3489 - 3491 [Scientific article]Open Access
Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, NET-GE: a web-server for linking protein variations to biological processes and pathways, in: Proceedings NGS 2016: Genome Annotation, 2016, pp. 55 - 56 (atti di: NGS 2016, Barcellona, Spain, April 4-6, 2016) [Abstract]
Ison, Jon; Rapacki, Kristoffer; Ménager, Hervé; Kalaš, Matúš; Rydza, Emil; Chmura, Piotr; Anthon, Christian; Beard, Niall; Berka, Karel; Bolser, Dan; Booth, Tim; Bretaudeau, Anthony; Brezovsky, Jan; Casadio, Rita; Cesareni, Gianni; Coppens, Frederik; Cornell, Michael; Cuccuru, Gianmauro; Davidsen, Kristian; Vedova, Gianluca Della; Dogan, Tunca; Doppelt-Azeroual, Olivia; Emery, Laura; Gasteiger, Elisabeth; Gatter, Thomas; Goldberg, Tatyana; Grosjean, Marie; Grüning, Björn; Helmer-Citterich, Manuela; Ienasescu, Hans; Ioannidis, Vassilios; Jespersen, Martin Closter; Jimenez, Rafael; Juty, Nick; Juvan, Peter; Koch, Maximilian; Laibe, Camille; Li, Jing-Woei; Licata, Luana; Mareuil, Fabien; Mičetić, Ivan; Friborg, Rune Møllegaard; Moretti, Sebastien; Morris, Chris; Möller, Steffen; Nenadic, Aleksandra; Peterson, Hedi; Profiti, Giuseppe; Rice, Peter; Romano, Paolo; Roncaglia, Paola; Saidi, Rabie; Schafferhans, Andrea; Schwämmle, Veit; Smith, Callum; Sperotto, Maria Maddalena; Sto, Tools and data services registry: a community effort to document bioinformatics resources, «NUCLEIC ACIDS RESEARCH», 2016, 44, pp. D38 - D47 [Scientific article]
G. Profiti; P. Fariselli; P.L. Martelli; F. Aggazio; R. Casadio, A graph-based approach for predicting protein function: challenges in interconnected data, in: Proceedings of the Italian Society of Bioinformatics (BITS): Annual Meeting 2015, 2015(atti di: Italian Society of Bioinformatics (BITS): Annual Meeting, Milano, 5/6/2015) [Poster]
Marco Maccaferri; Andrea Ricci; Silvio Salvi; Sara Giulia Milner; Enrico Noli; Pier Luigi Martelli; Rita Casadio; Eduard Akhunov; Simone Scalabrin; Vera Vendramin; Karim Ammar; Antonio Blanco; Francesca Desiderio;
Assaf Distelfeld; Jorge Dubcovsky; Tzion Fahima; Justin Faris; Abraham Korol; Andrea Massi; Anna Maria Mastrangelo; Michele Morgante; Curtis Pozniak; Amidou N’Diaye; Steven Xu; Roberto Tuberosa, A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding, «PLANT BIOTECHNOLOGY JOURNAL», 2015, 13, pp. 648 - 663 [Scientific article]Open Access
