Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, NET-GE: a web-server for NETwork-based human gene enrichment, «BIOINFORMATICS», 2016, 32, pp. 3489 - 3491 [Scientific article]Open Access
Ison, Jon; Rapacki, Kristoffer; Ménager, Hervé; Kalaš, Matúš; Rydza, Emil; Chmura, Piotr; Anthon, Christian; Beard, Niall; Berka, Karel; Bolser, Dan; Booth, Tim; Bretaudeau, Anthony; Brezovsky, Jan; Casadio, Rita; Cesareni, Gianni; Coppens, Frederik; Cornell, Michael; Cuccuru, Gianmauro; Davidsen, Kristian; Vedova, Gianluca Della; Dogan, Tunca; Doppelt-Azeroual, Olivia; Emery, Laura; Gasteiger, Elisabeth; Gatter, Thomas; Goldberg, Tatyana; Grosjean, Marie; Grüning, Björn; Helmer-Citterich, Manuela; Ienasescu, Hans; Ioannidis, Vassilios; Jespersen, Martin Closter; Jimenez, Rafael; Juty, Nick; Juvan, Peter; Koch, Maximilian; Laibe, Camille; Li, Jing-Woei; Licata, Luana; Mareuil, Fabien; Mičetić, Ivan; Friborg, Rune Møllegaard; Moretti, Sebastien; Morris, Chris; Möller, Steffen; Nenadic, Aleksandra; Peterson, Hedi; Profiti, Giuseppe; Rice, Peter; Romano, Paolo; Roncaglia, Paola; Saidi, Rabie; Schafferhans, Andrea; Schwämmle, Veit; Smith, Callum; Sperotto, Maria Maddalena; Stockinger, Heinz; Vařeková, Radka Svobodová; Tosatto, Silvio C E; de la Torre, Victor; Uva, Paolo; Via, Allegra; Yachdav, Guy; Zambelli, Federico; Vriend, Gert; Rost, Burkhard; Parkinson, Helen; Løngreen, Peter; Brunak, Søren, Tools and data services registry: a community effort to document bioinformatics resources, «NUCLEIC ACIDS RESEARCH», 2016, 44, pp. D38 - D47 [Scientific article]
G. Profiti; P. Fariselli; P.L. Martelli; F. Aggazio; R. Casadio, A graph-based approach for predicting protein function: challenges in interconnected data, in: Proceedings of the Italian Society of Bioinformatics (BITS): Annual Meeting 2015, 2015(atti di: Italian Society of Bioinformatics (BITS): Annual Meeting, Milano, 5/6/2015) [Poster]
Marco Maccaferri; Andrea Ricci; Silvio Salvi; Sara Giulia Milner; Enrico Noli; Pier Luigi Martelli; Rita Casadio; Eduard Akhunov; Simone Scalabrin; Vera Vendramin; Karim Ammar; Antonio Blanco; Francesca Desiderio;
Assaf Distelfeld; Jorge Dubcovsky; Tzion Fahima; Justin Faris; Abraham Korol; Andrea Massi; Anna Maria Mastrangelo; Michele Morgante; Curtis Pozniak; Amidou N’Diaye; Steven Xu; Roberto Tuberosa, A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding, «PLANT BIOTECHNOLOGY JOURNAL», 2015, 13, pp. 648 - 663 [Scientific article]Open Access
Profiti, Giuseppe; Fariselli, Piero; Casadio, Rita, AlignBucket: a tool to speed up 'all-against-all' protein sequence alignments optimizing length constraints, «BIOINFORMATICS», 2015, 31, pp. 3841 - 3843 [Scientific article]
Martelli, Pier Luigi; Savojardo, Castrense; Fariselli, Piero; Tasco, Gianluca; Casadio, Rita, Computer-based prediction of mitochondria-targeting peptides, in: Mitochondrial Medicine, New York, Springer New York, 2015, pp. 305 - 320 (METHODS IN MOLECULAR BIOLOGY) [Chapter or essay]
Giuseppe Profiti; Francesco Aggazio; Piero Fariselli; Pier Luigi Martelli; Rita Casadio, From protein sequence to function and structure with BAR+, in: Acta Crystallographica Section A, International Union of Crystallography (IUCr), 2015, 71, pp. 43 - 43 (atti di: The 29th European crystallographic meeting, Rovigno (Croazia), 23-28 agosto 2015) [Abstract]
Fariselli, Piero; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita, INPS is a web server for predicting the impact of non-synonymous variations on protein stability starting from protein sequence-, 2015. [Software]
Fariselli, Piero; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita, INPS: predicting the impact of non-synonymous variations on protein stability from sequence, «BIOINFORMATICS», 2015, 31, pp. 2816 - 2821 [Scientific article]Open Access
Akcapinar, Gunseli Bayram; Venturini, Alessandro; Martelli, Pier Luigi; Casadio, Rita; Sezerman, Ugur O, Modulating the thermostability of Endoglucanase I from trichoderma reesei using computational approaches, «PROTEIN ENGINEERING, DESIGN & SELECTION», 2015, 28, pp. 127 - 135 [Scientific article]
Di Lena, Pietro; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, NET-GE: a novel NETwork-based Gene Enrichment for detecting biological processes associated to Mendelian diseases, «BMC GENOMICS», 2015, 16, Article number: S6 , pp. 1 - 11 [Scientific article]Open Access
Profiti, Giuseppe; Piovesan, Damiano; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita ., Protein Sequence Annotation by Means of Community Detection, «CURRENT BIOINFORMATICS», 2015, 10, pp. 139 - 143 [Scientific article]
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins, «BIOINFORMATICS», 2015, 31, pp. 3269 - 3275 [Scientific article]
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, TPpred3 is a web-server ot detect and discriminate mitochondrial and chloroplastic targeting peptides in eukaryotic proteins, 2015. [Software]
Aggazio F; Casadio R, A genomic scale investigation on enhancer-promoter interactions mediated by transcription factors., in: 3S Biology Summer School 2014 Abstract Book, 2014, pp. 25 - 25 (atti di: 3S Biology Summer School, Povo (TN), 8-11 Settembre 2014) [Poster]
