Schweke H.; Xu Q.; Tauriello G.; Pantolini L.; Schwede T.; Cazals F.; Lheritier A.; Fernandez-Recio J.; Rodriguez-Lumbreras L.A.; Schueler-Furman O.; Varga J.K.; Jimenez-Garcia B.; Reau M.F.; Bonvin A.M.J.J.; Savojardo C.; Martelli P.L.; Casadio R.; Tubiana J.; Wolfson H.J.; Oliva R.; Barradas-Bautista D.; Ricciardelli T.; Cavallo L.; Venclovas C.; Olechnovic K.; Guerois R.; Andreani J.; Martin J.; Wang X.; Terashi G.; Sarkar D.; Christoffer C.; Aderinwale T.; Verburgt J.; Kihara D.; Marchand A.; Correia B.E.; Duan R.; Qiu L.; Xu X.; Zhang S.; Zou X.; Dey S.; Dunbrack R.L.; Levy E.D.; Wodak S.J., Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study, «PROTEOMICS», in corso di stampa, 23, Article number: 2200323, pp. 1 - 21 [articolo]
null, null; Jain, Shantanu; Bakolitsa, Constantina; Brenner, Steven E.; Radivojac, Predrag; Moult, John; Repo, Susanna; Hoskins, Roger A.; Andreoletti, Gaia; Barsky, Daniel; Chellapan, Ajithavalli; Chu, Hoyin; Dabbiru, Navya; Kollipara, Naveen K.; Ly, Melissa; Neumann, Andrew J.; Pal, Lipika R.; Odell, Eric; Pandey, Gaurav; Peters-Petrulewicz, Robin C.; Srinivasan, Rajgopal; Yee, Stephen F.; Yeleswarapu, Sri Jyothsna; Zuhl, Maya; Adebali, Ogun; Patra, Ayoti; Beer, Michael A.; Hosur, Raghavendra; Peng, Jian; Bernard, Brady M.; Berry, Michael; Dong, Shengcheng; Boyle, Alan P.; Adhikari, Aashish; Chen, Jingqi; Hu, Zhiqiang; Wang, Robert; Wang, Yaqiong; Miller, Maximilian; Wang, Yanran; Bromberg, Yana; Turina, Paola; Capriotti, Emidio; Han, James J.; Ozturk, Kivilcim; Carter, Hannah; Babbi, Giulia; Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita; Cline, Melissa S.; De Baets, Greet; Bonache, Sandra; Díez, Orland; Gutiérrez-Enríquez, Sara; Fernández, Alejandro; Montalban, Gemma; Ootes, Lars; Özkan, Selen; Padilla, Natàlia; Riera, Casandra; De la Cruz, Xavier; Diekhans, Mark; Huwe, Peter J.; Wei, Qiong; Xu, Qifang; Dunbrack, Roland L.; Gotea, Valer; Elnitski, Laura; Margolin, Gennady; Fariselli, Piero; Kulakovskiy, Ivan V.; Makeev, Vsevolod J.; Penzar, Dmitry D.; Vorontsov, Ilya E.; Favorov, Alexander V.; Forman, Julia R.; Hasenahuer, Marcia; Fornasari, Maria S.; Parisi, Gustavo; Avsec, Ziga; Çelik, Muhammed H.; Nguyen, Thi Yen Duong; Gagneur, Julien; Shi, Fang-Yuan; Edwards, Matthew D.; Guo, Yuchun; Tian, Kevin; Zeng, Haoyang; Gifford, David K.; Göke, Jonathan; Zaucha, Jan; Gough, Julian; Ritchie, Graham R. S.; Frankish, Adam; Mudge, Jonathan M.; Harrow, Jennifer; Young, Erin L.; Yu, Yao; Huff, Chad D.; Murakami, Katsuhiko; Nagai, Yoko; Imanishi, Tadashi; Mungall, Christopher J.; Jacobsen, Julius O. B.; Kim, Dongsup; Jeong, Chan-Seok; Jones, David T.; Li, Mulin Jun; Guthrie, Violeta Beleva; Bhattacharya, Rohit; Chen, Yun-Ching; Douville, Christopher; Fan, Jean; Kim, Dewey; Masica, David; Niknafs, Noushin; Sengupta, Sohini; Tokheim, Collin; Turner, Tychele N.; Yeo, Hui Ting Grace; Karchin, Rachel; Shin, Sunyoung; Welch, Rene; Keles, Sunduz; Li, Yue; Kellis, Manolis; Corbi-Verge, Carles; Strokach, Alexey V.; Kim, Philip M.; Klein, Teri E.; Mohan, Rahul; Sinnott-Armstrong, Nicholas A.; Wainberg, Michael; Kundaje, Anshul; Gonzaludo, Nina; Mak, Angel C. Y.; Chhibber, Aparna; Lam, Hugo Y. K.; Dahary, Dvir; Fishilevich, Simon; Lancet, Doron; Lee, Insuk; Bachman, Benjamin; Katsonis, Panagiotis; Lua, Rhonald C.; Wilson, Stephen J.; Lichtarge, Olivier; Bhat, Rajendra R.; Sundaram, Laksshman; Viswanath, Vivek; Bellazzi, Riccardo; Nicora, Giovanna; Rizzo, Ettore; Limongelli, Ivan; Mezlini, Aziz M.; Chang, Ray; Kim, Serra; Lai, Carmen; O’Connor, Robert; Topper, Scott; van den Akker, Jeroen; Zhou, Alicia Y.; Zimmer, Anjali D.; Mishne, Gilad; Bergquist, Timothy R.; Breese, Marcus R.; Guerrero, Rafael F.; Jiang, Yuxiang; Kiga, Nikki; Li, Biao; Mort, Matthew; Pagel, Kymberleigh A.; Pejaver, Vikas; Stamboulian, Moses H.; Thusberg, Janita; Mooney, Sean D.; Teerakulkittipong, Nuttinee; Cao, Chen; Kundu, Kunal; Yin, Yizhou; Yu, Chen-Hsin; Kleyman, Michael; Lin, Chiao-Feng; Stackpole, Mary; Mount, Stephen M.; Eraslan, Gökcen; Mueller, Nikola S.; Naito, Tatsuhiko; Rao, Aliz R.; Azaria, Johnathan R.; Brodie, Aharon; Ofran, Yanay; Garg, Aditi; Pal, Debnath; Hawkins-Hooker, Alex; Kenlay, Henry; Reid, John; Mucaki, Eliseos J.; Rogan, Peter K.; Schwarz, Jana M.; Searls, David B.; Lee, Gyu Rie; Seok, Chaok; Krämer, Andreas; Shah, Sohela; Huang, ChengLai V.; Kirsch, Jack F.; Shatsky, Maxim; Cao, Yue; Chen, Haoran; Karimi, Mostafa; Moronfoye, Oluwaseyi; Sun, Yuanfei; Shen, Yang; Shigeta, Ron; Ford, Colby T.; Nodzak, Conor; Uppal, Aneeta; Shi, Xinghua; Joseph, Thomas; Kotte, Sujatha; Rana, Sadhna; Rao, Aditya; Saipradeep, V. G.; Sivadasan, Naveen; Sunderam, Uma; Stanke, Mar, CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods, «GENOME BIOLOGY», 2024, 25, pp. 1 - 46 [articolo]Open Access
Bertolini, Elisa; Babbi, Giulia; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita, MultifacetedProtDB: a database of human proteins with multiple functions, «NUCLEIC ACIDS RESEARCH», 2024, 52, pp. 494 - 501 [articolo]Open Access
Madeo G.; Savojardo C.; Manfredi M.; Martelli P.L.; Casadio R., CoCoNat: a novel method based on deep learning for coiled-coil prediction, «BIOINFORMATICS», 2023, 39, Article number: btad495, pp. 1 - 8 [articolo]Open Access
S. Bovo,
G. Schiavo,
F. Fanelli,
A. Ribani,
F. Bertolini,
M. Gallo,
G. Galimberti,
Stefania Dall’Olio,
PL. Martelli,
R. Casadio,
U. Pagotto,
L. Fontanesi, Combined targeted and untargeted metabolomics in pigs coupled with genomic information: Towards a comprehensive genetic characterization of the pig metabolome, in: Proceedings of the 39th International Conference on Animal Genetics, Cape Town, South Africa (2023), 2023, pp. 15 - 16 (atti di: 39th International Conference on Animal Genetics, Cape Town, South Africa, 2-7 July 2023) [Contributo in Atti di convegno]
Savojardo C.; Martelli P.L.; Casadio R., Finding functional motifs in protein sequences with deep learning and natural language models, «CURRENT OPINION IN STRUCTURAL BIOLOGY», 2023, 81, Article number: 102641, pp. 1 - 12 [articolo]Open Access
Manfredi M.; Savojardo C.; Martelli P.L.; Casadio R., ISPRED-SEQ: Deep Neural Networks and Embeddings for Predicting Interaction Sites in Protein Sequences, «JOURNAL OF MOLECULAR BIOLOGY», 2023, 435, Article number: 167963, pp. 167963 - 167971 [articolo]Open Access
Licata L.; Via A.; Turina P.; Babbi G.; Benevenuta S.; Carta C.; Casadio R.; Cicconardi A.; Facchiano A.; Fariselli P.; Giordano D.; Isidori F.; Marabotti A.; Martelli P.L.; Pascarella S.; Pinelli M.; Pippucci T.; Russo R.; Savojardo C.; Scafuri B.; Valeriani L.; Capriotti E., Resources and tools for rare disease variant interpretation, «FRONTIERS IN MOLECULAR BIOSCIENCES», 2023, 10, Article number: 1169109, pp. 1 - 18 [articolo]Open Access
Samuele Bovo,Giuseppina Schiavo, Flaminia Fanelli, Anisa Ribani, Francesca Bertolini, Maurizio Gallo, Giuliano Galimberti, Stefania Dall'olio, Pier Luigi Martelli, Rita Casadio, Uberto Pagatto, Luca Fontanesi, Whole metabolome and genome analyses provide information on the genetic variability affecting the metabolism in pigs, in: ASPA 25th Congress Book of Abstract, 2023, pp. 25 - 26 (atti di: The 25th congress of the Animal Science and Production Association, Monopoli, June 13-16, 2023) [Contributo in Atti di convegno]
Savojardo C.; Babbi G.; Baldazzi D.; Martelli P.L.; Casadio R., A glance into mthfr deficiency at a molecular level, «INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES», 2022, 23, Article number: 167, pp. 1 - 9 [articolo]Open Access
Manfredi, Matteo; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita, E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants, «BIOINFORMATICS», 2022, 38, pp. 5168 - 5174 [articolo]Open Access
Casadio R.; Martelli P.L.; Savojardo C., Machine learning solutions for predicting protein–protein interactions, «WILEY INTERDISCIPLINARY REVIEWS. COMPUTATIONAL MOLECULAR SCIENCE», 2022, 12, pp. 1 - 21 [articolo]Open Access
Castrense Savojardo, Davide Baldazzi, Giulia Babbi, Pier Luigi Martelli, Rita Casadio, Mapping human disease-associated enzymes into Reactome allows characterization of disease groups and their interactions, «SCIENTIFIC REPORTS», 2022, 12, Article number: 17963, pp. 1 - 10 [articolo]Open Access
Babbi, Giulia; Savojardo, Castrense; Baldazzi, Davide; Martelli, Pier Luigi; Casadio, Rita, Pathogenic variation types in human genes relate to diseases through Pfam and InterPro mapping, «FRONTIERS IN MOLECULAR BIOSCIENCES», 2022, 9, Article number: 966927, pp. 1 - 12 [articolo]Open Access
Madeo, Giovanni; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita, SVMyr: A Web Server Detecting Co- and Post-translational Myristoylation in Proteins, «JOURNAL OF MOLECULAR BIOLOGY», 2022, 434, Article number: 167605, pp. 1 - 9 [articolo]Open Access
