Foto del docente

Ivan Rivalta

Associate Professor

Department of Industrial Chemistry "Toso Montanari"

Academic discipline: CHIM/02 Physical Chemistry

Publications

Rivalta I.; Batista V.S., Community Network Analysis of Allosteric Proteins, in: Methods in Molecular Biology, New York, Humana Press Inc., 2021, pp. 137 - 151 (METHODS IN MOLECULAR BIOLOGY) [Chapter or essay]

Saltalamacchia, Andrea; Casalino, Lorenzo; Borišek, Jure; Batista, Victor S.; Rivalta, Ivan; Magistrato, Alessandra, Decrypting the Information Exchange Pathways across the Spliceosome Machinery, «JOURNAL OF THE AMERICAN CHEMICAL SOCIETY», 2020, 142, pp. 8403 - 8411 [Scientific article]

Di Russo E.; Blum I.; Rivalta I.; Houard J.; Da Costa G.; Vurpillot F.; Blavette D.; Rigutti L., Detecting Dissociation Dynamics of Phosphorus Molecular Ions by Atom Probe Tomography, «JOURNAL OF PHYSICAL CHEMISTRY. A, MOLECULES, SPECTROSCOPY, KINETICS, ENVIRONMENT, & GENERAL THEORY», 2020, 124, pp. 10977 - 10988 [Scientific article]

Jaiswal V.K.; Segarra-Marti J.; Marazzi M.; Zvereva E.; Assfeld X.; Monari A.; Garavelli M.; Rivalta I., First-principles characterization of the singlet excited state manifold in DNA/RNA nucleobases, «PHYSICAL CHEMISTRY CHEMICAL PHYSICS», 2020, 22, pp. 15496 - 15508 [Scientific article]

Marcheselli J.; Chateau D.; Lerouge F.; Baldeck P.; Andraud C.; Parola S.; Baroni S.; Corni S.; Garavelli M.; Rivalta I., Simulating Plasmon Resonances of Gold Nanoparticles with Bipyramidal Shapes by Boundary Element Methods, «JOURNAL OF CHEMICAL THEORY AND COMPUTATION», 2020, 16, pp. 3807 - 3815 [Scientific article]

Massaro A.; Avila J.; Goloviznina K.; Rivalta I.; Gerbaldi C.; Pavone M.; Costa Gomes M.F.; Padua A.A.H., Sodium diffusion in ionic liquid-based electrolytes for Na-ion batteries: The effect of polarizable force fields, «PHYSICAL CHEMISTRY CHEMICAL PHYSICS», 2020, 22, pp. 20114 - 20122 [Scientific article]

Wodak, Shoshana J; Paci, Emanuele; Dokholyan, Nikolay V; Berezovsky, Igor N; Horovitz, Amnon; Li, Jing; Hilser, Vincent J; Bahar, Ivet; Karanicolas, John; Stock, Gerhard; Hamm, Peter; Stote, Roland H; Eberhardt, Jerome; Chebaro, Yassmine; Dejaegere, Annick; Cecchini, Marco; Changeux, Jean-Pierre; Bolhuis, Peter G; Vreede, Jocelyne; Faccioli, Pietro; Orioli, Simone; Ravasio, Riccardo; Yan, Le; Brito, Carolina; Wyart, Matthieu; Gkeka, Paraskevi; Rivalta, Ivan; Palermo, Giulia; McCammon, J Andrew; Panecka-Hofman, Joanna; Wade, Rebecca C; Di Pizio, Antonella; Niv, Masha Y; Nussinov, Ruth; Tsai, Chung-Jung; Jang, Hyunbum; Padhorny, Dzmitry; Kozakov, Dima; McLeish, Tom, Allostery in Its Many Disguises: From Theory to Applications, «STRUCTURE», 2019, 27, pp. 566 - 578 [Scientific article]

Gheeraert A.; Pacini L.; Batista V.S.; Vuillon L.; Lesieur C.; Rivalta I., Exploring Allosteric Pathways of a V-Type Enzyme with Dynamical Perturbation Networks, «JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL», 2019, 123, pp. 3452 - 3461 [Scientific article]

Segarra-Marti J.; Segatta F.; Mackenzie T.A.; Nenov A.; Rivalta I.; Bearpark M.J.; Garavelli M., Modeling multidimensional spectral lineshapes from first principles: Application to water-solvated adenine, «FARADAY DISCUSSIONS», 2019, 221, pp. 219 - 244 [Scientific article]

Stadler A.M.; Schneidewind J.; Zamponi M.; Knieps-Grunhagen E.; Gholami S.; Schwaneberg U.; Rivalta I.; Garavelli M.; Davari M.D.; Jaeger K.-E.; Krauss U., Ternary Complex Formation and Photoactivation of a Photoenzyme Results in Altered Protein Dynamics, «JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL», 2019, 123, pp. 7372 - 7384 [Scientific article]

Borrego-Varillas R.; Nenov A.; Ganzer L.; Oriana A.; Manzoni C.; Tolomelli A.; Rivalta I.; Mukamel S.; Garavelli M.; Cerullo G., Two-dimensional UV spectroscopy: A new insight into the structure and dynamics of biomolecules, «CHEMICAL SCIENCE», 2019, 10, pp. 9907 - 9921 [Scientific article]Open Access

GARAVELLI, NENOV, RIVALTA, WEINGART, ALTOE', SEGARRA-MARTI, DOKUKINA IRINA, COBRAMM 2.0 — A software interface for tailoring molecular electronic structure calculations and running nanoscale (QM/MM) simulations, «JOURNAL OF MOLECULAR MODELING», 2018, 24, pp. 271 - 271 [Scientific article]

Negre, Christian F.A.; Morzan, Uriel N.; Hendrickson, Heidi P.; Pal, Rhitankar; Lisi, George P.; Patrick Loria, J.; Rivalta, Ivan; Ho, Junming; Batista, Victor S., Eigenvector centrality for characterization of protein allosteric pathways, «PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA», 2018, 115, pp. E12201 - E12208 [Scientific article]

Palermo, Giulia; Chen, Janice S.; Ricci, Clarisse G.; Rivalta, Ivan; Jinek, Martin; Batista, Victor S.; Doudna, Jennifer A.; McCammon, J Andrew, Key role of the REC lobe during CRISPR-Cas9 activation by 'sensing', 'regulating', and 'locking' the catalytic HNH domain, «QUARTERLY REVIEWS OF BIOPHYSICS», 2018, 51, pp. 1 - 11 [Scientific article]

Segarra-Marti Javier, Zvereva Elena, Marazzi Marco, Brazard Johanna, Dumont Elise, Assfeld Xavier, Haacke Stefan, Garavelli Marco, Monari Antonio, Leonard Jeremie, Rivalta Ivan, Resolving the Singlet Excited State Manifold of Benzophenone by First-Principles Simulations and Ultrafast Spectroscopy, «JOURNAL OF CHEMICAL THEORY AND COMPUTATION», 2018, 14, pp. 2570 - 2585 [Scientific article]

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