Casadio, Rita; Savojardo, Castrense; Fariselli, Piero; Capriotti, Emidio; Martelli, Pier Luigi, Turning Failures into Applications: The Problem of Protein ΔΔG Prediction, in: 2449, Berlino, Springer, 2022, pp. 169 - 185 (METHODS IN MOLECULAR BIOLOGY) [Chapter or essay]
Bovo S., Schiavo G., Fanelli F., Ribani A., Bertolini F., Utzeri V.J., Gallo M., Galimberti G., Dall'Olio S., Martelli P.L., Casadio R., Pagotto U., Fontanesi L., Unravelling the genetic basis governing the porcine metabolism, in: Proceedings of the 12th World Congress on Genetics Applied to Livestock Production, 2022, pp. 1 - 4 (atti di: 12th World Congress on Genetics Applied to Livestock Production, Rotterdam, 3-8 July 2022) [Contribution to conference proceedings]
Andrews A.J.; Puncher G.N.; Bernal-Casasola D.; Di Natale A.; Massari F.; Onar V.; Toker N.Y.; Hanke A.; Pavey S.A.; Savojardo C.; Martelli P.L.; Casadio R.; Cilli E.; Morales-Muniz A.; Mantovani B.; Tinti F.; Cariani A., Ancient DNA SNP-panel data suggests stability in bluefin tuna genetic diversity despite centuries of fluctuating catches in the eastern Atlantic and Mediterranean, «SCIENTIFIC REPORTS», 2021, 11, Article number: 20744 , pp. 1 - 11 [Scientific article]Open Access
Baldazzi D.; Savojardo C.; Martelli P.L.; Casadio R., BENZ WS: The Bologna ENZyme Web Server for four-level EC number annotation, «NUCLEIC ACIDS RESEARCH», 2021, 49, pp. W60 - W66 [Scientific article]Open Access
Madeo G.; Savojardo C.; Martelli P.L.; Casadio R., BetAware-Deep: An Accurate Web Server for Discrimination and Topology Prediction of Prokaryotic Transmembrane β-barrel Proteins, «JOURNAL OF MOLECULAR BIOLOGY», 2021, 433, Article number: 166729 , pp. 1 - 8 [Scientific article]Open Access
Bonora, Elena; Chakrabarty, Sanjiban; Kellaris, Georgios; Tsutsumi, Makiko; Bianco, Francesca; Bergamini, Christian; Ullah, Farid; Isidori, Federica; Liparulo, Irene; Diquigiovanni, Chiara; Masin, Luca; Rizzardi, Nicola; Cratere, Mariapia Giuditta; Boschetti, Elisa; Papa, Valentina; Maresca, Alessandra; Cenacchi, Giovanna; Casadio, Rita; Martelli, Pierluigi; Matera, Ivana; Ceccherini, Isabella; Fato, Romana; Raiola, Giuseppe; Arrigo, Serena; Signa, Sara; Sementa, Angela Rita; Severino, Mariasavina; Striano, Pasquale; Fiorillo, Chiara; Goto, Tsuyoshi; Uchino, Shumpei; Oyazato, Yoshinobu; Nakamura, Hisayoshi; Mishra, Sushil K; Yeh, Yu-Sheng; Kato, Takema; Nozu, Kandai; Tanboon, Jantima; Morioka, Ichiro; Nishino, Ichizo; Toda, Tatsushi; Goto, Yu-Ichi; Ohtake, Akira; Kosaki, Kenjiro; Yamaguchi, Yoshiki; Nonaka, Ikuya; Iijima, Kazumoto; Mimaki, Masakazu; Kurahashi, Hiroki; Raams, Anja; MacInnes, Alyson; Alders, Mariel; Engelen, Marc; Linthorst, Gabor; de Koning, Tom; den Dunnen, Wilfred; Dijkstra, Gerard; van Spaendonck, Karin; van Gent, Dik C; Aronica, Eleonora M; Picco, Paolo; Carelli, Valerio; Seri, Marco; Katsanis, Nicholas; Duijkers, Floor A M; Taniguchi-Ikeda, Mariko; De Giorgio, Roberto, Biallelic variants in LIG3 cause a novel mitochondrial neurogastrointestinal encephalomyopathy, «BRAIN», 2021, 144, pp. 1451 - 1466 [Scientific article]
Luchetti A.; Forni G.; Martelossi J.; Savojardo C.; Martelli P.L.; Casadio R.; Skaist A.M.; Wheelan S.J.; Mantovani B., Comparative genomics of tadpole shrimps (Crustacea, Branchiopoda, Notostraca): Dynamic genome evolution against the backdrop of morphological stasis, «GENOMICS», 2021, 113, pp. 4163 - 4172 [Scientific article]Open Access
Martelli P.L.; Savojardo C.; Fariselli P.; Tartari G.; Casadio R., Computer-Aided Prediction of Protein Mitochondrial Localization, in: Methods in Molecular Biology, New York, NY, Humana Press Inc., 2021, pp. 433 - 452 (METHODS IN MOLECULAR BIOLOGY) [Chapter or essay]
Walsh I.; Fishman D.; Garcia-Gasulla D.; Titma T.; Pollastri G.; Capriotti E.; Casadio R.; Capella-Gutierrez S.; Cirillo D.; Del Conte A.; Dimopoulos A.C.; Del Angel V.D.; Dopazo J.; Fariselli P.; Fernandez J.M.; Huber F.; Kreshuk A.; Lenaerts T.; Martelli P.L.; Navarro A.; Broin P.O.; Pinero J.; Piovesan D.; Reczko M.; Ronzano F.; Satagopam V.; Savojardo C.; Spiwok V.; Tangaro M.A.; Tartari G.; Salgado D.; Valencia A.; Zambelli F.; Harrow J.; Psomopoulos F.E.; Tosatto S.C.E., DOME: recommendations for supervised machine learning validation in biology, «NATURE METHODS», 2021, 18, pp. 1122-1127 - 1127 [Scientific article]Open Access
Manfredi M.; Savojardo C.; Martelli P.L.; Casadio R., DeepREx-WS: A web server for characterising protein–solvent interaction starting from sequence, «COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL», 2021, 19, pp. 5791 - 5799 [Scientific article]Open Access
Babbi G.; Savojardo C.; Martelli P.L.; Casadio R., Huntingtin: A protein with a peculiar solvent accessible surface, «INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES», 2021, 22, Article number: 2878 , pp. 1 - 12 [Scientific article]Open Access
Savojardo C.; Babbi G.; Martelli P.L.; Casadio R., Mapping OMIM Disease–Related Variations on Protein Domains Reveals an Association Among Variation Type, Pfam Models, and Disease Classes, «FRONTIERS IN MOLECULAR BIOSCIENCES», 2021, 8, Article number: 617016 , pp. 1 - 9 [Scientific article]Open Access
Savojardo C.; Martelli P.L.; Casadio R.; Fariselli P., On the critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation, «BRIEFINGS IN BIOINFORMATICS», 2021, 22, pp. 601 - 603 [Scientific article]Open Access
Savojardo, Castrense; Manfredi, Matteo; Martelli, Pier Luigi; Casadio, Rita, Solvent Accessibility of Residues Undergoing Pathogenic Variations in Humans: From Protein Structures to Protein Sequences, «FRONTIERS IN MOLECULAR BIOSCIENCES», 2021, 7, Article number: 626363 , pp. 1 - 9 [Scientific article]Open Access
Ledwaba M.B.; Glover B.A.; Matle I.; Profiti G.; Martelli P.L.; Casadio R.; Zilli K.; Janowicz A.; Marotta F.; Garofolo G.; van Heerden H., Whole genome sequence analysis of brucella abortus isolates from various regions of South Africa, «MICROORGANISMS», 2021, 9, Article number: 570 , pp. 1 - 14 [Scientific article]Open Access
