C. Savojardo;P. L. Martelli;P. Fariselli;R. Casadio, TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs, 2014. [software]
Castrense Savojardo; Pier Luigi Martelli; Piero Fariselli; Rita Casadio, TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs, «BIOINFORMATICS», 2014, 30, Article number: btu411, pp. 2973 - 2974 [articolo]
Aggazio F; Casadio R, A genomic scale investigation on enhancer-promoter interactions mediated by transcription factors., in: BITS 2013 10th Annual Meeting of the Bioinformatics Italian Society Abstract Book, 2013, pp. 110 - 110 (atti di: BITS Annual Meeting 2013, Udine, 21-23 Maggio 2013) [atti di convegno-poster]
Radivojac P;Clark WT;Oron TR;Schnoes AM;Wittkop T;Sokolov A;Graim K;Funk C;Verspoor K;Ben-Hur A;Pandey G;Yunes JM;Talwalkar AS;Repo S;Souza ML;Piovesan D;Casadio R;Wang Z;Cheng J;Fang H;Gough J;Koskinen P;Törönen P;Nokso-Koivisto J;Holm L;Cozzetto D;Buchan DW;Bryson K;Jones DT;Limaye B;Inamdar H;Datta A;Manjari SK;Joshi R;Chitale M;Kihara D;Lisewski AM;Erdin S;Venner E;Lichtarge O;Rentzsch R;Yang H;Romero AE;Bhat P;Paccanaro A;Hamp T;Kaßner R;Seemayer S;Vicedo E;Schaefer C;Achten D;Auer F;Boehm A;Braun T;Hecht M;Heron M;Hönigschmid P;Hopf TA;Kaufmann S;Kiening M;Krompass D;Landerer C;Mahlich Y;Roos M;Björne J;Salakoski T;Wong A;Shatkay H;Gatzmann F;Sommer I;Wass MN;Sternberg MJ;Škunca N;Supek F;Bošnjak M;Panov P;Džeroski S;Šmuc T;Kourmpetis YA;van Dijk AD;ter Braak CJ;Zhou Y;Gong Q;Dong X;Tian W;Falda M;Fontana P;Lavezzo E;Di Camillo B;Toppo S;Lan L;Djuric N;Guo Y;Vucetic S;Bairoch A;Linial M;Babbitt PC;Brenner SE;Orengo C;Rost B;Mooney SD;Friedberg I, A large-scale evaluation of computational protein function prediction., «NATURE METHODS», 2013, 10, pp. 221 - 227 [articolo]
Bertolini F.; Schiavo G.; Scotti E.; Ribani A.; Martelli P.L.; Casadio R.; Fontanesi L., Application of the Ion Torrent technology to identify single nucleotide polymorphisms in the rabbit genome, «ITALIAN JOURNAL OF ANIMAL SCIENCE», 2013, 12, pp. 64 - 64 [abstract]
Rita Casadio; Giovanni Paolella, Aspetti biochimici di bioinformatica e biologia computazionale, in: Biochimica Umana, Napoli, CASA EDITRICE IDELSON GNOCCHI, 2013, pp. 709 - 746 [capitolo di libro]
C. Savojardo;P. Fariselli;P. L. Martelli;R. Casadio, BCov: a method for predicting beta-sheet topology using sparse inverse covariance estimation and integer programming, «BIOINFORMATICS», 2013, 29, pp. 3151 - 3157 [articolo]
Castrense Savojardo; Piero Fariselli; Pier Luigi Martelli; Rita Casadio, BCov is a software package designed for predicting protein beta-sheet topology from amino acid sequence., 2013. [software]
Castrense Savojardo; Piero Fariselli; Rita Casadio, BETAWARE: a machine-learning tool to detect and predict transmembrane beta barrel proteins in Prokaryotes. Bioinformatics 29:504-505 (2013), 2013. [software]
Savojardo C;Fariselli P;Casadio R, BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes., «BIOINFORMATICS», 2013, 29, pp. 504 - 505 [articolo]
L. Fontanesi;F. Bertolini;E. Scotti;G. Schiavo;P. Trevisi;M. Colombo;P. L. Martelli;R. Casadio;P. Bosi, Bitter taste receptor genes in pigs: SNP identification by using next- generation semiconductor sequencing, in: Energy and protein metabolism and nutrition in sustainable animal production, Wageningen, Wageningen Academic Publisher, «PUBLICATION - EUROPEAN ASSOCIATION FOR ANIMAL PRODUCTION», 2013, 134, pp. 297 - 298 (atti di: Energy and protein metabolism and nutrition in sustainable animal production, Sacramento, California, USA, 9-12 September, 2013) [Contributo in Atti di convegno]
Masetti R; Pigazzi M; Togni M; Astolfi A; Indio V; Manara E; Casadio R; Pession A; Basso G; Locatelli F, CBFA2T3-GLIS2 fusion transcript is a novel common feature in pediatric, cytogenetically normal AML, not restricted to FAB M7 subtype., «BLOOD», 2013, 121, pp. 3469 - 3472 [articolo]
Fontanesi, Luca; Dall'Olio, Stefania; Fanelli, Flaminia; Scotti, Emilio; Schiavo, Giuseppina; Bertolini, Francesca; Tassone, Francesco; Samore', ANTONIA BIANCA; Bovo, Samuele; Mazzoni, Gianluca; Gallo, M.; Buttazzoni, L.; Galimberti, Giuliano; Calo', DANIELA GIOVANNA; Martelli, PIER LUIGI; Casadio, Rita; Pagotto, Uberto; Russo, Vincenzo, Combined genomics and metabolomics approaches to identify markers associated with production traits in pigs., «ITALIAN JOURNAL OF ANIMAL SCIENCE», 2013, 12, pp. 25 - 25 [abstract]Open Access
Profiti G ; Piovesan D ; Martelli PL ; Fariselli P ; Casadio R, Community detection within clusters helps large scale protein annotation: Preliminary results of modularity maximization for the bar+ database, in: BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Setubal, SciTePress – Science and Technology Publications, 2013, pp. 328 - 332 (atti di: BIOINFORMATICS 2013 - the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona (ES), 11-14/02/2013) [Contributo in Atti di convegno]
Beninati S;Iorio RA;Tasco G;Serafini-Fracassini D;Casadio R;Del Duca S, Expression of different forms of transglutaminases by immature cells of Helianthus tuberosus sprout apices., «AMINO ACIDS», 2013, 44, pp. 271 - 283 [articolo]
