Babbi, Giulia; Martelli, Pier Luigi; Profiti, Giuseppe; Bovo, Samuele; Savojardo, Castrense; Casadio, Rita, eDGAR: a database of Disease-Gene Associations with annotated Relationships among genes, «BMC GENOMICS», 2017, 18, Article number: 554, pp. 25 - 64 [articolo]Open Access
Casadio, Rita; Fariselli, Piero; Martelli, Pier Luigi; Di Lena, Pietro; Bovo, Samuele, From Protein Variations to Biological Processes and Pathways with NET-GE, «GENOMICS AND COMPUTATIONAL BIOLOGY», 2017, 3, Article number: e45, pp. 1 - 6 [articolo]Open Access
Savojardo, Castrense; Fariselli, Piero; Martelli, Pier Luigi; Casadio, Rita, ISPRED4: interaction sites PREDiction in protein structures with a refining grammar model, «BIOINFORMATICS», 2017, 33, pp. 1656 - 1663 [articolo]
SAVOJARDO, CASTRENSE; Fariselli, Piero; MARTELLI, PIER LUIGI; CASADIO, RITA, ISPRED4 is a web server based on machine-learning for the prediction of protein-protein interaction sites in protein structures, 2017. [software]
Carraro, Marco; Minervini, Giovanni; Giollo, Manuel; Bromberg, Yana; Capriotti, Emidio; Casadio, Rita; Dunbrack, Roland; Elefanti, Lisa; Fariselli, Pietro; Ferrari, Carlo; Gough, Julian; Katsonis, Panagiotis; Leonardi, Emanuela; Lichtarge, Olivier; Menin, Chiara; Martelli, Pier Luigi; Niroula, Abhishek; Pal, Lipika R; Repo, Susanna; Scaini, Maria Chiara; Vihinen, Mauno; Wei, Qiong; Xu, Qifang; Yang, Yuedong; Yin, Yizhou; Zaucha, Jan; Zhao, Huiying; Zhou, Yaoqi; Brenner, Steven E; Moult, John; Tosatto, Silvio C E, Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI, «HUMAN MUTATION», 2017, N/A, pp. N/A - N/A [articolo]
Pier Luigi Martelli; Giuseppe Profiti; Rita Casadio, Protein Functional Annotation, in: Reference Module in Life Sciences: Encyclopedia of Bioinformatics and Computational Biology, Amsterdam, Elsevier, 2017, pp. 8 - 14 [capitolo di libro]
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments, «BIOINFORMATICS», 2017, 33, pp. 347 - 353 [articolo]
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, SChloro is a web-server to predict protein sub-chloroplastic localization in plants, 2017. [software]
Profiti, Giuseppe; Martelli, Pier Luigi; Casadio, Rita, The Bologna Annotation Resource (BAR 3.0): improving protein functional annotation, «NUCLEIC ACIDS RESEARCH», 2017, 45, pp. W285 - W290 [articolo]
Babbi, Giulia; Martelli, Pier Luigi; Profiti, Giuseppe; Bovo, Samuele; Savojardo, Castrense; Casadio, Rita, The eDGAR database of Disease-Gene Associations with annotated Relationships among genes, 2017. [banche dati]
Gregory Neils Puncher, Alessia Cariani, Elisabetta Cilli, Francesco Massari, Castrense Savojardo, Sara De Fanti, Agostino Leone, Pier Luigi Martelli, Andrea Luchetti, Barbara Mantovani, Rita Casadio, Arturo Morales, Vedat Onar, Nezir Yaşar Toker, Tom Moens, Fausto Tinti, The impact of fisheries on bluefin tuna (Thunnus thynnus) over two millennia (2nd century BC – 20th century AD): Genetic and genomic analyses of ancient tuna remains from the Mediterranean, Atlantic, and Black Seas, in: Fish and Fishing Communities. Understanding Ancient and Modern Fisheries through Archaeological Fish Remains, 2017, pp. 44 - 45 (atti di: ICAZ 19 FRWG, Fish and Fishing Communities. Understanding Ancient and Modern Fisheries through Archaeological Fish Remains, Stintino e Alghero, 1-7 Ottobre 2017) [atti di convegno-abstract]
Daneshjou, Roxana; Wang, Yanran; Bromberg, Yana; Bovo, Samuele; Martelli, Pier L; Babbi, Giulia; Pietro Di, Lena; Casadio, Rita; Edwards, Matthew; Gifford, David; Jones, David T; Sundaram, Laksshman; Bhat, Rajendra Rana; Xiaolin, Li; Pal, Lipika R.; Kundu, Kunal; Yin, Yizhou; Moult, John; Jiang, Yuxiang; Pejaver, Vikas; Pagel, Kymberleigh A.; Biao, Li; Mooney, Sean D.; Radivojac, Predrag; Shah, Sohela; Carraro, Marco; Gasparini, Alessandra; Leonardi, Emanuela; Giollo, Manuel; Ferrari, Carlo; Tosatto, Silvio C E; Bachar, Eran; Azaria, Johnathan R.; Ofran, Yanay; Unger, Ron; Niroula, Abhishek; Vihinen, Mauno; Chang, Billy; Wang, Maggie H; Franke, Andre; Petersen, Britt-Sabina; Pirooznia, Mehdi; Zandi, Peter; Mccombie, Richard; Potash, James B.; Altman, Russ B.; Klein, Teri E.; Hoskins, Roger A.; Repo, Susanna; Brenner, Steven E.; Morgan, Alexander A., Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges, «HUMAN MUTATION», 2017, 38, pp. 1182 - 1192 [articolo]Open Access
Jiang, Yuxiang; Oron, Tal Ronnen; Clark, Wyatt T.; Bankapur, Asma R.; D’Andrea, Daniel; Lepore, Rosalba; Funk, Christopher S.; Kahanda, Indika; Verspoor, Karin M.; Ben-Hur, Asa; Koo, Da Chen Emily; Penfold-Brown, Duncan; Shasha, Dennis; Youngs, Noah; Bonneau, Richard; Lin, Alexandra; Sahraeian, Sayed M. E.; Martelli, Pier Luigi; Profiti, Giuseppe; Casadio, Rita; Cao, Renzhi; Zhong, Zhaolong; Cheng, Jianlin; Altenhoff, Adrian; Skunca, Nives; Dessimoz, Christophe; Dogan, Tunca; Hakala, Kai; Kaewphan, Suwisa; Mehryary, Farrokh; Salakoski, Tapio; Ginter, Filip; Fang, Hai; Smithers, Ben; Oates, Matt; Gough, Julian; Törönen, Petri; Koskinen, Patrik; Holm, Liisa; Chen, Ching-Tai; Hsu, Wen-Lian; Bryson, Kevin; Cozzetto, Domenico; Minneci, Federico; Jones, David T.; Chapman, Samuel; Bkc, Dukka; Khan, Ishita K.; Kihara, Daisuke; Ofer, Dan; Rappoport, Nadav; Stern, Amos; Cibrian-Uhalte, Elena; Denny, Paul; Foulger, Rebecca E.; Hieta, Reija; Legge, Duncan; Lovering, Ruth C.; Magrane, Michele; Melidoni, Anna N.; Mutowo-Meullenet, Prudence; Pichler, Klemens; Shypitsyna, Aleksandra; Li, Biao; Zakeri, Pooya; Elshal, Sarah; Tranchevent, Léon-Charles; Das, Sayoni; Dawson, Natalie L.; Lee, David; Lees, Jonathan G.; Sillitoe, Ian; Bhat, Prajwal; Nepusz, Tamás; Romero, Alfonso E.; Sasidharan, Rajkumar; Yang, Haixuan; Paccanaro, Alberto; Gillis, Jesse; Sedeño-Cortés, Adriana E.; Pavlidis, Paul; Feng, Shou; Cejuela, Juan M.; Goldberg, Tatyana; Hamp, Tobias; Richter, Lothar; Salamov, Asaf; Gabaldon, Toni; Marcet-Houben, Marina; Supek, Fran; Gong, Qingtian; Ning, Wei; Zhou, Yuanpeng; Tian, Weidong; Falda, Marco; Fontana, Paolo; Lavezzo, Enrico; Toppo, Stefano; Ferrari, Carlo; Giollo, Manuel; Piovesan, Damiano; Tosatto, Silvio C.E.; del Pozo, Angela; Fernández, José M.; Maietta, Paolo; Valencia, Alfonso; Tress, Michael L.; Benso, Alfredo; Di Carlo, Stefano; Politano, Gianfranco; Savino, Alessandro; Rehman, Hafeez Ur; Re, Matteo; Mesiti, Marco; Valentini, Giorgio; Bargsten, Joachim W.; van Dijk, Aalt D. J.; Gemovic, Branislava; Glisic, Sanja; Perovic, Vladmir; Veljkovic, Veljko; Veljkovic, Nevena; Almeida-e-Silva, Danillo C.; Vencio, Ricardo Z. N.; Sharan, Malvika; Vogel, Jörg; Kansakar, Lakesh; Zhang, Shanshan; Vucetic, Slobodan; Wang, Zheng; Sternberg, Michael J. E.; Wass, Mark N.; Huntley, Rachael P.; Martin, Maria J.; O’Donovan, Claire; Robinson, Peter N.; Moreau, Yves; Tramontano, Anna; Babbitt, Patricia C.; Brenner, Steven E.; Linial, Michal; Orengo, Christine A.; Rost, Burkhard; Greene, Casey S.; Mooney, Sean D.; Friedberg, Iddo; Radivojac, Predrag, An expanded evaluation of protein function prediction methods shows an improvement in accuracy, «GENOME BIOLOGY», 2016, 17, Article number: 184, pp. 1 - 19 [articolo]Open Access
Sazzini, Marco; De Fanti, Sara; Cherubini, Anna; Quagliariello, Andrea; Profiti, Giuseppe; Martelli, Pier Luigi; Casadio, Rita; Ricci, Chiara; Campieri, Massimo; Lanzini, Alberto; Volta, Umberto; Caio, Giacomo; Franceschi, Claudio; Spisni, Enzo; Luiselli, Donata, Ancient pathogen-driven adaptation triggers increased susceptibility to non-celiac wheat sensitivity in present-day European populations, «GENES & NUTRITION», 2016, 11, pp. 1 - 11 [articolo]
Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, From protein variations to biological processes and pathways with NET-GE, in: .Genomics and Computational Biology, Kernel Press UG (haftungsbeschränkt), 2016, pp. 1 - 2 (atti di: IWWBIO 2016, 4th International Work-Conference on Bioinformatics and Biomedical Engineering, Granada, Spain, 20-22 April 2016) [atti di convegno-abstract]
