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Paolo Bonifazi

Professore associato

Dipartimento di Fisica e Astronomia "Augusto Righi"

Settore scientifico disciplinare: PHYS-06/A Fisica per le scienze della vita, l’ambiente e i beni culturali

Pubblicazioni

  1. Rodríguez-Bodero A, Bonifazi P, Tønnesen J, Encinas-Pérez JM. Picrotoxin-Induced Epileptogenic Hippocampal Organotypic Slice Cultures (hOTCs). Methods Mol Biol. 2025;2899:367-388. doi: 10.1007/978-1-0716-4386-0_23. PMID: 40067635.
  2. A Jimenez-Marin, I Diez, A Erramuzpe, S Stramaglia, P Bonifazi, JM Cortes. Open datasets and code for multi-scale relations on structure, function and neuro-genetics in the human brain. Sci Data. 2024 Feb 29;11(1):256. doi: 10.1038/s41597-024-03060-2.
  3. J Martínez-Gardeazabal, M Moreno-Rodríguez, A Llorente-Ovejero, E Gonález de San Román, L Lombardero, I Bengoetxea de Tena, J Sustacha, C Matute, I Manuel, P Bonifazi1, R Rodríguez-Puertas1 Cell lipotypes localization in brain by mass spectrometry imaging 2024, Biorxiv. Cold Spring Harbor Lab. https://doi.org/10.1101/2024.02.02.578599 (under revision in Science Advances) (1 equal senior author contribution).
  4. Martin-Suarez S., Cortes JM, Bonifazi P. Blockage of STAT3 during epileptogenesis prevents GABAergic loss and imprinting of the epileptic state. BRAIN, awad055, https://doi.org/10.1093/brain/awad055
  5. Diez I, Garcia-Moreno F, Carral-Sainz N, Stramaglia S, Nieto-Reyes A, D’Amato M, Cortes JM, Bonifazi P. Linking hubness, embryonic neurogenesis, transcriptomics and diseases in human brain networks 2023, Biorxiv. Cold Spring Harbor Lab. [https://doi.org/10.1101/2022.04.01.486541] (under revision in Nature Communication)
  6. M Chiappalone, V Rosa Cota, M Carè, M Di Florio, R Beaubois, S Buccelli, F Barban, M Brofiga, A Averna, F Bonacini, D J. Guggenmos, Y Bornat, P Massobrio, P Bonifazi, T Levi. Neuromorphic-based neuroprostheses for brain rewiring: state-of-the art and perspectives in neuroengineering. Review paper. Brain Sci 2022 Nov 19;12(11):1578. doi: 10.3390/brainsci12111578.
  7. Fernandez-Iriondo I, Jimenez-Marin A, Sierra B, Aginako N, Bonifazi P, Cortes JM. Brain Mapping of Behavioral Domains Using Multi-Scale Networks and Canonical Correlation Analysis. Front Neurosci. 2022 Jun 21;16:889725. doi: 10.3389/fnins.2022.889725. eCollection 2022.
  8. Fernandez-Iriondo I, Jimenez-Marin A, Diez I, Bonifazi P, Swinnen SP, Muñoz MA, Cortes JM. Small variation in dynamic functional connectivity in cerebellar networks. Neurocomputing, Volume 461, 21 October 2021, Pages 751-761
  9. Sierra-Torre V, Plaza-Zabala A, Bonifazi P, Abiega O, Díaz-Aparicio I, Tegelberg S, Lehesjoki AE, Valero J, Sierra A. Microglial phagocytosis dysfunction in the dentate gyrus is related to local neuronal activity in a genetic model of epilepsy. Epilepsia. 2020 Sep 17. doi: 10.1111/epi.16692. JIF:6.04 JR: 49/598 Q1
  10. Mosbacher Y, Khoyratee F, Goldin M, Kanner S, Malakai Y, Silva M, Grassia F, Ben Simon Y, Cortes J, Barzilai A, Levi T, Bonifazi P Toward neuroprosthetic real-time communication from in silico to biological neuronal network via patterned optogenetic stimulation. Sci Rep. 2020 May 5;10(1):7512. doi: 10.1038/s41598-020-63934-4. JIF:4.00 JR: 9/145 Q1
  11. Changchun He, Xujun Duan, Lucina Uddin, Asier Erramuzpe, Paolo Bonifazi, Xiaonan Guo, Jinming Xiao, Heng Chen, Wei Sheng, Wei Liao, Jesus M. Cortes, Huafu Chen. Structure-Function Connectomics Reveal Aberrant Developmental Trajectories in the Developing Autistic Brain Cereb Cortex. 2020 May 7. pii: bhaa098. doi: 10.1093/cercor/bhaa098. JIF:5.04 JR: 29/596 Q1
  12. Buccelli S, Bornat Y, Colombi I, Ambroise M, Martines L, Pasquale V, Bisio M, Tessadori J, Nowak P, Grassia F, Averna A, Tedesco M, Bonifazi P, Difato F, Massobrio P, Levi T, Chiappalone M. A Neuromorphic Prosthesis to Restore Communication in Neuronal Networks. iScience. 2019 Sep 27;19:402-414. doi: 10.1016/j.isci.2019.07.046. Epub 2019 Aug 1. JIF:N/A JR: 6/145 Q1
  13. Lozovaya N, Nardou R, Tyzio R, Chiesa M, Pons-Bennaceur A, Eftekhari S, Bui T, Billon-Grand M, Rasero J, Bonifazi P, Gaiarsa J-L, Ferrari DC and Ben-Ari Y. Early alterations in a mouse model of Rett syndrome: the GABA developmental shift is abolished at birth. Sci Rep. 2019 Jun 25;9(1):9276. doi: 10.1038/s41598-019-45635-9. JIF:4.00 JR: 9/145 Q1
  14. R. Cloarec, B. Riffault, A. Dufour, H. Rabiei, L-A. Gouty-Colomer, C. Dumon, D. Guimond, A. Pons-Benaceur, P. Bonifazi, S. Eftekhari, N. Lozovaya, D. C. Ferrari, Y. Ben-Ari. Pyramidal neuron growth and increased hippocampal volume during labor and birth in autism. Science Advances 23 Jan 2019: Vol. 5, no. 1, eaav0394 DOI: 10.1126/sciadv.aav0394. JIF:13.12 JR: 3/145 Q1
  15. Fernandez A, Dumon C, Guimond D, Tyzio R, Bonifazi P, Lozovaya N, Burnashev N, Ferrari DC, Ben-Ari Y.The GABA Developmental Shift Is Abolished by Maternal Immune Activation Already at Birth. Cereb Cortex. 2018 Nov 3. doi: 10.1093/cercor/bhy279. JIF:5.04 JR: 29/596 Q1
  16. Luccioli S, Angulo-Garcia D, Cossart R, Malvache A, Modol L, Sousa VH, Bonifazi P1 and Torcini A1. Modeling driver cells in developing neuronal networks. PLoS Comput Biol. 2018 Nov 2;14(11):e1006551. doi: 10.1371/journal.pcbi.1006551. eCollection 2018 Nov. (1 equal senior author contribution). JIF:4.7 JR: 34/596 Q1
  17. Camino-Pontes B, Diez I, Jimenez-Marin A, Rasero J, Erramuzpe A, Bonifazi P, Stramaglia S, Swinnen S and Cortes JM. Interaction Information Along Lifespan of the Resting Brain Dynamics Reveals a Major Redundant Role of the Default Mode Network. Entropy 2018, 20(10), 742; [https://doi.org/10.3390/e20100742]. JIF:2.49 JR: 796/4116 Q2

  18. Kanner S, Goldin M, Galron R, Hanein Y, Ben Jacob E, Bonifazi P1 and Barzilai A1. Astrocytes restore connectivity and synchronization in dysfunctional cerebellar networks. Proceedings of the National Academy of Sciences July 2018, 201718582; DOI: 10.1073/pnas.1718582115 (1 equal senior author contribution). JIF:9.41 JR: 4/195 Q1

  19. Bonifazi P1, Erramuzpe A1, Diez I, Gabilondo I, Boisgontier M, Pauwels L, Stramaglia S, Swinnen S, Cortes J. Structure–function multi‐scale connectomics reveals a major role of the fronto‐striato‐thalamic circuit in brain aging. Human Brain Mapping, doi.org/10.1002/hbm.24312 (1 equal first author contribution). JIF:4.42 JR: 59/596 Q1

  20. Levi T, Bonifazi P, Massobrio P and Chiappalone M. Closed-loop systems for next-generation neuroprostheses (editorial article for a featured Research Topic with 27 papers and 196 authors). Front. Neurosci. doi: 10.3389/fnins.2018.00026. JIF: 3.57 JR: 122/596 Q1

  21. Lissek T,et al. Building Bridges through Science. Neuron. 2017 Nov 15;96(4):730-735. doi: 10.1016/j.neuron.2017.09.028.

  22. Diez I., Drijkoningen D., Stramaglia S., Bonifazi P., Marinazzo D., Gooijers J., Swinnen S. P., Cortes J. M. Enhanced pre-frontal functional-structural networks to support postural control deficits after traumatic brain injury in a pediatric population. Netw Neurosci. 2017 Jun 1;1(2): 116-142. doi: 10.1162/NETN_a_00007. eCollection 2017 Spring. JIF: N/A JR: 141/596 Q2

  23. Rasero J, Alonso-Montes C, Diez I, Olabarrieta-Landa L, Remaki L, Escudero I, Mateos B, Bonifazi P, Fernandez M, Arango-Lasprilla JC, Stramaglia S, Cortes JM. Group-Level Progressive Alterations in Brain Connectivity Patterns Revealed by Diffusion-Tensor Brain Networks across Severity Stages in Alzheimer's Disease. Front Aging Neurosci. 2017 Jul 7;9:215. doi: 10.3389/fnagi.2017.00215. eCollection 2017. JIF: 4.36 JR: 113/596 Q1

  24. Bovetti S., Moretti C. Dal Maschio M., Zucca S., Bonifazi P., Fellin T. Simultaneous fast imaging and optogenetic inhibition of neuronal networks in the intact mouse brain. [https://www.ncbi.nlm.nih.gov/pubmed/?term=Simultaneous+high-speed+imaging+and+optogenetic+inhibition+in+the+intact+mouse+brain] 2017 Jan 5;7:40041. doi: 10.1038/srep40041. JIF:4.00 JR: 9/145 Q1

  25. Soloperto A., Bisio M., Palazzolo G., Chiappalone M., Bonifazi P.1 and Difato F.1 Modulation of Neural Network Activity through Single Cell Ablation: An in Vitro Model of Minimally Invasive Neurosurgery. Molecules. 2016 Aug 5;21(8). pii: E1018. doi: 10.3390/molecules21081018. (1 equal senior author contribution). JIF:3.28 JR: 242/769 Q1

  26. [http://arxiv.org/find/q-bio/1/au:+Diez_I/0/1/0/all/0/1] I.1, [http://arxiv.org/find/q-bio/1/au:+Bonifazi_P/0/1/0/all/0/1] P.1, [http://arxiv.org/find/q-bio/1/au:+Escudero_I/0/1/0/all/0/1] I., [http://arxiv.org/find/q-bio/1/au:+Mateos_B/0/1/0/all/0/1] B., [http://arxiv.org/find/q-bio/1/au:+Munoz_M/0/1/0/all/0/1] M., [http://arxiv.org/find/q-bio/1/au:+Stramaglia_S/0/1/0/all/0/1] S., [http://arxiv.org/find/q-bio/1/au:+Cortes_J/0/1/0/all/0/1] J. A novel brain partition highlights the modular skeleton shared by structure and function. [http://www.ncbi.nlm.nih.gov/pubmed/26037235] 2015 Jun 3;5:10532. doi: 10.1038/srep10532. (1 equally contributed to the work). JIF:4.00 JR: 9/145 Q1
  27. Kanner S., Bisio M., Cohen G., Goldin M., Tedesco M., Hanein Y., Ben-Jacob E., Barzilai A., Chiappalone M. and Bonifazi P. Design, surface treatment, cellular plating and culturing of modular neuronal networks composed of functionally inter-connected circuits. [http://www.ncbi.nlm.nih.gov/pubmed/25938894] 2015 Apr 15;(98). doi: 10.3791/52572. JIF:0.93 JR: 391/596 Q3
  28. Luccioli S, Ben-Jacob E, Barzilai A, Bonifazi P1, Torcini A1. Clique of functional hubs orchestrates population bursts in developmentally regulated neural networks. PLoS Comput Biol. 2014 Sep 25; 10(9): e1003823. doi: 10.1371/journal.pcbi.1003823. (1 equal senior author contribution). JIF:4.7 JR: 34/596 Q1
  29. Carmeli C.1, Bonifazi P.1, M. Small1 and H. Robinson1. Quantifying network properties in multi-electrode recordings: spatiotemporal characterization and inter-trial variation of evoked gamma oscillations in mouse somatosensory cortex in vitro. Front Comput Neurosci. 2013 Oct 16; 7:134. doi: 10.3389/fncom.2013.00134. (1 equally contributed to the work). JIF:2.54 JR: 239/596 Q2
  30. Bonifazi P. 1, Difato F. 1, Massobrio P. 1, Breschi G.L., Pasquale V., Levi T., Goldin M., Bornat Y., Tedesco M., Bisio M., Kanner S., Galron R., Tessadori J., Taverna S. and Chiappalone M. In vitro large-scale experimental and theoretical studies for the realization of bi-directional brain-prostheses. Front Neural Circuits. 2013;7:40. doi: 10.3389/fncir.2013.00040. (1 equally contributed to the work). JIF:3.16 JR: 78 /596 Q1
  31. Marissal T., Bonifazi P., Picardo M., Nardou R., Petit L., Baude A. , Fishell G., Ben-Ari Y., Cossart R. Pioneer glutamatergic cells develop into a morpho-functionally distinct population in the juvenile CA3 hippocampus. Nat Commun. 2012; 3: 1316. doi: 10.1038/ncomms2318. JIF:12.12 JR: 59 /2169 Q1
  32. Meshulam L., Galron R., Kanner S., De Pittà M., Bonifazi P., Goldin M., Frenkel D., Ben-Jacob E. and Barzilai A. The role of the neuro-astro-vascular unit in the etiology of ataxia telangiectasia. Front Pharmacol. 2012;3:157. doi: 10.3389/fphar.2012.00157. JIF:4.4 JR: 96 /769 Q1
  33. Picardo M., Guigue P., Bonifazi P., Batista-Brito R., Allene C., Ribas A., Fishell G., Baude A., Cossart R. Pioneer GABAergic cells comprise a subpopulation of hub neurons in the developing hippocampus. Neuron. 2011 Aug 25;71(4):695-709. JIF:14.42 JR: 4 /596 Q1
  34. Feldt S. 1, Bonifazi P. 1, and Cossart R. Dissecting functional connectivity of cortical microcircuits: experimental and theoretical insights. TINS, 2011 May;34(5):225-36. (1 equally contributed to the work). JIF:12.89 JR: 16 /596 Q1
  35. Bonifazi P. 1, Goldin M. 1, Picardo M., Jorquera I., Bianconi G., Represa A., Ben-Ari Y. and Cossart R. GABAergic hub neurons orchestrate synchrony in developing hippocampal networks. Science. 2009 Dec 4;326(5958):1419-24 (1 equally contributed to the work). JIF:41.85 JR: 2/145 Q1
  36. Allène C, Cattani A, Ackman JB, Bonifazi P, Aniksztejn L, Ben-Ari Y, Cossart R. Sequential generation of two distinct synapse-driven network patterns in developing neocortex. J Neurosci. 2008 Nov 26; 28(48):12851-63. JIF:5.67 JR: 23/596 Q1
  37. Mazzoni A., Broccard F., Garcia E., Bonifazi P., Ruaro M.E. and Torre V. On the dynamics of the spontaneous activity in neuronal networks. PLoS ONE. 2007 May 9. JIF:2.74 JR: 10 /145 Q1
  38. Ban J., Bonifazi P., Pinato G., Broccard F., Studer L., Torre V. and Ruaro M.E. ES-derived neurons form functional networks in vitro. Stem Cells. 2006 Nov 16. JIF:6.02 JR: 223 /2169 Q1
  39. Bonifazi P.1, Ruaro M.E.1 and Torre V. Statistical properties of information processing in neuronal networks. Eur J Neurosci. 2005 Dec. 22 (11): 2953-64 (1 equally contributed to the work). JIF:3.12 JR: 149/596 Q2
  40. Ruaro M.E.2, Bonifazi P.2, Torre V. Towards the neurocomputer: Image processing and pattern recognition with neuronal cultures. IEEE Transactions on Biomedical Engineering, vol. 52, pp. 371-383, 2005 (2 Paolo Bonifazi and Maria Elisabetta Ruaro equally contributed to the paper). JIF:4.42 JR: 245 /4844 Q1
  41. Bonifazi P., Fromherz P. Silicon Chip for Electronic Communication between Nerve Cells by Noninvasive Interfacing and Analog-Digital Processing. Advanced Materials 14 (2002) 1190-1193. JIF:27.40 JR: 4 /4844 Q1

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