Foto del docente

Daniele Cesini

Adjunct professor

Department of Pharmacy and Biotechnology

Publications

D. Cesini, G. Donvito, et al., “Advancements in data management services for distributed e-infrastructures: the eXtreme-DataCloud project”, EPJ Web Conf. 214 04044 (2019), Computing in High Energy Physics 2018 Conference, CHEP2018, DOI: 10.1051/epjconf/201921404044

L. Verderame, I. Merelli, L. Morganti, E. Corni, D. Cesini, D. D’Agostino, A. Merlo, “A secure cloud-edges computing architecture for metagenomics analysis”, Future Generation Computer Systems, 2019, ISSN 0167-739X, https://doi.org/10.1016/j.future.2019.09.013

D.D'Agostino, A.Quarati, A. Clematis, L. Morganti, E. Corni, V. Giansanti, D. Cesini, I. Merelli,
"SoC-based computing infrastructures for scientific applications and commercial services: Performance and economic evaluations", Future Generation Computer Systems, Volume 96, 2019, Pages 11-22, ISSN 0167-739X, https://doi.org/10.1016/j.future.2019.01.024.

I. Merelli, F. Fornari, F. Tordini, D. D’Agostino, M. Aldinucci, D.Cesini, “Exploiting Docker containers over Grid computing for a comprehensive study of chromatin conformation in different cell types”, Journal of Parallel and Distributed Computing, Volume 134, 2019, Pages 116-127, ISSN 0743-7315, https://doi.org/10.1016/j.jpdc.2019.08.002

L. dell’Agnello, T. Boccali, D. Cesini, et al., “INFN Tier–1: a distributed site”, EPJ Web Conf. 214 08002 (2019), Computing in High Energy Physics 2018 Conference, CHEP2018, DOI: 10.1051/epjconf/201921408002

D. D’Agostino, L. Morganti, E. Corni, D., I. Merelli, “Combining Edge and Cloud computing for low-power, cost-effective metagenomics analysis”, Future Generation Computer Systems, Volume 90, 2019, Pages 79-85, ISSN 0167-739X, https://doi.org/10.1016/j.future.2018.07.036

V. Giansanti, S. Beretta, D. Cesini, D. D'Agostino and I. Merelli, "Parallel Computing in Deep Learning: Bioinformatics Case Studies," 2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), Pavia, Italy, 2019, pp. 329-333.

L. Morganti, E. Corni, L. Lama, C. Pellegrino, F. Zanon Boito, I. Merelli, D. D'Agostino, D. Cesini, “On low‐power SoCs as storage bricks for Bioinformatics”, Concurrency Computat Pract Exper. 2019;e5415. https://doi.org/10.1002/cpe.5415

D. Cesini et al., "The eXtreme-DataCloud project: data management services for the next generation distributed e-infrastructures," 2018 Conference Grid, Cloud & High Performance Computing in Science (ROLCG), Cluj-Napoca, 2018, pp. 1-4.

A. Cavalli, D. Cesini, E. Fattibene, A. Prosperini, V. Sapunenko, “HSM and backup services at INFN-CNAF”, EPJ Web Conf. 214 08002 (2019), Computing in High Energy Physics 2018 Conference, CHEP2018, DOI: 10.1051/epjconf/201921404009

L. Morganti, D.Cesini et al., "Low-Power Storage Bricks and Bioinformatics on Systems-On-Chip," 2018 26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP), Cambridge, United Kingdom, 2018, pp. 635-638, DOI: 10.1109/PDP2018.2018.00106

I. Merelli, L. Morganti, E. Corni, C. Pellegrino, D. Cesini, L. Roverelli, G. Zereik, D. D’Agostino, “Low-power portable devices for metagenomics analysis: Fog computing makes bioinformatics ready for the Internet of Things”, 2018, Future Generation Computer Systems, Available online 15 June 2018, ISSN 0167-739X, DOI: 10.1016/j.future.2018.05.010

M. Di Foggia, S. Ottani, A. Torreggiani, A. Zamuner, M. Dettin, S. Sanchez‐Cortes, D. Cesini, A. Tinti, “Surface enhanced Raman scattering and quantum‐mechanical calculations on self‐assembling oligopeptides”, 2018, Journal of Raman Spectroscopy, 2018, 1–15, DOI: 10.1002/jrs.5359

D. Ciangottini et al., "Distributed and On-demand Cache for CMS Experiment at LHC", 2018 IEEE 14th International Conference on e-Science (e-Science), Amsterdam, 2018, pp. 336-337.

A. Cavalli, D. Cesini, E. Fattibene, L. Morganti, A. Prosperini, P. P. Ricci, V. Sapunenko, “Dynamic sharing of tape drives accessing scientific data”, Journal of Physics: Conference Series, Volume 1085, Issue 4, Computing in High Energy Physics 2016 Conference, CHEP2016, DOI: 10.1088/1742-6596/1085/4/042039

A. Cavalli, D. Cesini, E. Fattibene, A. Prosperini, V. Sapunenko, “HSM and backup services at INFN-CNAF”, EPJ Web Conf. 214 08002 (2019), Computing in High Energy Physics 2018 Conference, CHEP2018, DOI: 10.1051/epjconf/201921404009

T Boccali, A Cavalli et al., “Extending the farm on external sites: the INFN Tier-1 experience”, 2017, Journal of Physics: Conference Series, vol 898, October 2017, pages 082018, IOP Publishing, DOI: 10.1088/1742-6596/898/8/082018

D. Cesini, E. Corni, A. Falabella, et al., “Power-Efficient Computing: Experiences from the COSA Project,” Scientific Programming, vol. 2017, Article ID 7206595, 14 pages, 2017, DOI: 10.1155/2017/7206595.

D. Cesini et al., “The INFN COSA Project: Low-Power Computing and Storage”, 2017, Advances in Parallel Computing, Ebook, Volume 32: Parallel Computing is Everywhere, Pages 770 – 779, DOI: 10.3233/978-1-61499-843-3-770

I. Merelli, P. Cozzi, E. Ronchieri, D. Cesini and D. D’Agostino, “Porting bioinformatics applications from grid to cloud: A macromolecular surface analysis application case study”, 2017, The International Journal of High Performance Computing Applications, Vol 31, Issue 3, pp. 182-195, DOI: 10.1177/1094342015588565

D. D'Agostino, D. Cesini, E. Corni, A. Ferraro, L. Morganti, A. Quarati, I. Merelli, “Performance and Economic Evaluations in Adopting Low Power Architectures: A Real Case Analysis”, 2017, Book: Economics of Grids, Clouds, Systems, and Services, Springer International Publishing, pages 177-189. DOI: 10.1007/978-3-319-68066-8_14

S. Beretta, L. Morganti, E. Corni, A. Ferraro, D. Cesini, D. D’Agostino, L. Milanesi, I. Merelli, "Low-Power Architectures for miRNA-Target Genome Wide Analysis," 2017 25th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP), St. Petersburg, 2017, pp. 309-312, DOI: 10.1109/PDP.2017.88

L. Morganti, E. Corni, A. Ferraro, D. Cesini, D. D'Agostino and I. Merelli, "Implementing a Space-Aware Stochastic Simulator on Low-Power Architectures: A Systems Biology Case Study," 2017 25th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP), St. Petersburg, 2017, pp. 303-308, DOI: 10.1109/PDP.2017.55

T. Boccali et al., “Extending the farm on external sites: the INFN Tier-1 experience”, Journal of Physics: Conference Series, 2017, Volume 898, Number 8, pages 082018, DOI: 10.1088/1742-6596/898/8/082018

D. Cesini et al., "High throughput data acquisition with InfiniBand on x86 low-power architectures for the LHCb upgrade," 2016 IEEE-NPSS Real Time Conference (RT), Padua, 2016, pp. 1-3. DOI: 10.1109/RTC.2016.7543136

E. Corni, L. Morganti, M.P. Morigi, R. Brancaccio, M. Bettuzzi, G. Levi, E. Peccenini, D. Cesini, A. Ferraro, "X-Ray Computed Tomography Applied to Objects of Cultural Heritage: Porting and Testing the Filtered Back-Projection Reconstruction Algorithm on Low Power Systems-on-Chip", 2016 24th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP), Heraklion, 2016, pp. 369-372, DOI: 10.1109/PDP.2016.60

L. Morganti, D. Cesini and A. Ferraro, "Evaluating Systems on Chip through HPC Bioinformatic and Astrophysic Applications", 2016 24th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP), Heraklion, 2016, pp. 541-544; doi: 10.1109/PDP.2016.82

I. Merelli, E. Mosca, D. Cesini, E. Ronchieri, L. Milanesi; “Evaluating mixed HTC/cloud approaches for parameter sweep applications in systems biology”; In the Proceedings of the 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO) Granada, Spain, 2014; ISBN:9788415814849; pp 551-562.

A. Costantini, D. Cesini, D. Michelotto, M. Bencivenni, V.Boccia, E. Giorgio, A. Laganà; “On the implementation of three popular computational chemistry applications using the EGI distributed computing infrastructure”; Proceedings of the 2014 International Conference on Computational Science and Its Applications, University of Minho, Guimaraes, Portugal, DOI: 10.1007/978-3-319-09144-0_41

E. Ronchieri, D. Cesini, D. D'Agostino, V. Ciaschini, G. Dalla Torre, P. Cozzi, D. Salomoni, A. Clematis, L. Milanesi, I. Merelli; “The WNoDeS cloud virtualization framework: a macromolecular surface analysis application case study”; In the proceeding of the 22nd Euromicro International Conference on Parallel, Distributed and network-based Processing (PDP), At Turin, Italy, 2014; pp 218 - 222 ; ISSN: 1066-6192; DOI: 10.1109/PDP.2014.54

M. Bencivenni, D. Michelotto, R. Alfieri, R. Brunetti, A. Ceccanti, D. Cesini, A. Costantini, E. Fattibene, L. Gaido, G. Misurelli, E. Ronchieri, D. Salomoni, P. Veronesi, V. Venturi, M. C. Vistroli; “Accessing Grid and Cloud Services through a Scientific Web portal”; Journal of Grid Computing", June 2015, Volume 13, Number 2, Pages 159-175, ISSN 1572-9184, DOI: 10.1007/s10723-014-9310-y.

S. Bonora, A. Pisi, S.Ottani, D. Cesini, A. Maris, M. Di Foggia; “Raman and SERS study on ibuprofen metal complexes with biomedical interest”; Vibrational Spectroscopy, Volume 73, July 2014; Pages 45-55; ISSN 0924-2031: http://dx.doi.org/10.1016/j.vibspec.2014.04.009.

A. Costantini., D. Michelotto, M. Bencivenni, D. Cesini, P. Veronesi, E. Giorgio, L- Gaido, A. Laganà, A. Monetti, M. Manzolaro, A. Andrighetto; “ Implementation of the ANSYS Commercial Suite on the EGI Grid Platform”; Lecture Notes in Computer Science, 2013, Volume 7971/2013, 84-95; DOI: 10.1007/978-3-642-39637-3_7

A. Costantini, D. Cesini, A. Laganà ; “Packages and Tools for the Virtual Chemistry, Molecular and Materials Science and Technologies Research Community”; Virt&l-Comm.3.2013.26, ISSN: 2279-8773

Bencivenni, M.; Brunetti, R.; Caltroni, A.; Ceccanti, A.; Cesini, D.; Di Benedetto, M.; Fattibene, E.; Gaido, L.; Michelotto, D.; Misurelli, G.; Venturi, V.; Veronesi, P.; Zappi, R.; “A web-based utility for Grid data management”; in the Proceedings of the International Symposium on Grid and Cloud (ISGC 2013), Mar 2013, Taipei, TW, ISSN 1824-8039

R. Alfieri, S. Arezzini, G. B. Barone, U. Becciani, M. Bencivenni, V. Boccia, D. Bottalico, L. Carracciuolo, D. Cesini, A. Ciampa, A. Costantini, S. Cozzini, R. De Pietri, M. Drudi, A. Ghiselli, E. Mazzoni, S. Ottani, A. Venturini, P. Veronesi, "The HPC Testbed of the Italian Grid Infrastructure", 2013 21st Euromicro International Conference on Parallel, Distributed, and Network-Based Processing, 2013 , pp. 241-248 , ISBN: 978-1-4673-5321-2, DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/PDP.2013.42.

D. D'Agostino, A. Clematis, A. Quarati, D. Cesini et al., “Cloud Infrastructures for In Silico Drug Discovery: Economic and Practical Aspects,” BioMed Research International, vol. 2013, Article ID 138012, 19 pages, 2013. https://doi.org/10.1155/2013/138012.

D. Cesini, M. Bencivenni, A. Costantini, E. Giorgio, G. La Rocca, V. Boccia, R. Alfieri, R. De Pietri, L. Gaido, A. Venturini, S. Ottani, A. Buzzi, P. Malguzzi, D. Mastrangelo, “Porting workflows based on small and medium parallelism applications to the Italian Grid Infrastructure”, in the Proceedings of Science for the International Symposium on Grids and Clouds 2013 (ISGC2013), Mar 2013, Taipei, TW, ISSN 1824-8039

Cesini, D; Dongiovanni, D; Fattibene, E; “WMSMonitor advancements in the EMI era”;Journal of Physics: Conference Series 396(2012) 032036, International Conference on Computing in High Energy and Nuclear Physics 2012 (CHEP2012); doi:10.1088/1742-6596/396/3/032036

G. Codispoti, C. Grandi, A. Fanfani, D. Spiga, M. Cinquilli, F. Farina, V. Miccio, F. Fanzago, A. Sciaba', S. Lacaprara, S. Belforte, D. Bonacorsi, A. Sartirana, D. Dongiovanni, D. Cesini, S. Wakefield, J. Hernández, S. Lemaitre, M. Litmaath, Y. Calas and E Roche, “Use of the gLite-WMS in CMS for production and analysis”, 2010 J. Phys.: Conf. Ser. 219 062007 doi: 10.1088/1742-6596/219/6/062007

A. Fanfani, A. Afaq,J.A. Sanches, J. Andreeva, G. Bagliesi,L. Bauerdick, et al (73), “Distributed Analysis in CMS”, Journal Of Grid Computing 8 (2, Sp. Iss. SI) 159-179 (2010), doi:10.1007/s10723-010-9152-1

M. Bencivenni, M. Canaparo, F. Capannini, L. Carota, M. Carpene, A. Cavalli, A. Ceccanti, M. Cecchi, D. Cesini, et al, "INFN-CNAF activity in the TIER-1 and GRID for LHC experiments", ipdps, pp.1-9, 2009 IEEE International Symposium on Parallel&Distributed Processing, 2009, DOI: 10.1109/IPDPS.2009.5160968

D. Cesini, D. Dongiovanni, E. Fattibene, T. Ferrari, “On gLite WMS/LB Monitoring and Management through WMSMonitor”, in the Proc. of 17th Int. Conference on Computing in High Energy and Nuclear Physics (CHEP 2009), Mar 2009, Prague, CZ. Journal of Physics: Conference Series, 219 062040, doi: 10.1088/1742-6596/219/6/062040

C. Aiftimiei, P. Andreetto, S. Bertocco, S. D. Fina, S. D. Ronco, A. Dorigo, A. Gianelle, M. Marzolla, M. Mazzucato, M. Sgaravatto, M. Verlato, L. Zangrando, M. Corvo, V. Miccio, A. Sciaba, D. Cesini, D. Dongiovanni andC. Grandi, “Job submission and management through web services: the experience with the CREAM service”, 2008 J. Phys.: Conf. Ser. 119 062004 doi: 10.1088/1742-6596/119/6/062004

D. Cesini, D. Dongiovanni, E. Fattibene, T. Ferrari, “WMSMonitor: a Monitoring Tool for Workload and Job Lifecycle in Grids”; in the Proc. of the 9th IEEE/ACM Int. Conference on Grid Computing (Grid 2008), Tsukuba, Japan, Sep 2008 (pp. 209-216; DOI 10.1109/GRID.2008.4662801; ISBN: 978-1-4244-2578-5)

D. Lucchesi, S. Pagan Griso, G. Compostella, I. Sfiligoi, F. Delli Paoli, D. Cesini, “CDF experience with Monte Carlo production using LCG Grid, in Proc. of Conference on Computing in High Energy and Nuclear Physics (CHEP 2007), Victoria BC (CA), Sep 2007, J. Phys.: Conf. Ser. 119 072025, doi: 10.1088/1742-6596/119/7/072025

D.Cesini, V. Ciaschini, D. Dongiovanni, et al., “Enabling a priority-based FairShare in the EGEE Infrastructure”, in Proc. of Conference on Computing in High Energy and Nuclear Physics (CHEP 2007), Victoria BC (CA), Sep 2007, J. Phys.: Conf. Ser. 119 062023, doi: 10.1088/1742-6596/119/6/062023

C. Aiftimiei, A. Cavalli, D. Cesini, and others, “Operations structure for the management, control and support of the INFN-GRID/Grid.It production infrastructure”, In Proceedings of the International Conference on Computing in High Energy and Nuclear Physics (CHEP2006), Mumbai, India, 2006

C. Aiftimiei, S. Andreozzi, D. Cesini, and others, "Prototyping Production and Analysis Frameworks for LHC Experiments based on LCG/EGEE/INFN-Grid Middleware", In Proceedings of the International Conference on Computing in High Energy and Nuclear Physics (CHEP2006), Mumbai, India, 2006

D. Cesini, S.Morelli, F.Parmiggiani, “Analysis of an intense Bora Event in the Adriatic Area”, Natural Hazards and Earth System Sciences Vol. 4, pp. 323-337, 2004