Voskanian, A.; Katsonis, P.; Lichtarge, O.; Pejaver, V.; Radivojac, P.; Mooney, S. D.; Capriotti, E.; Bromberg, Y.; Wang, Y.; Miller, M.; Martelli, P. L.; Savojardo, C.; Babbi, G.; Casadio, R.; Cao, Y.; Sun, Y.; Shen, Y.; Garg, A.; Pal, D.; Yu, Y.; Huff, C. D.; Tavtigian, S. V.; Young, E.; Neuhausen, S. L.; Ziv, E.; Pal, L. R.; Andreoletti, G.; Brenner, S. E.; Kann, M. G., Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer, «HUMAN MUTATION», 2019, 40, pp. 1612 - 1622 [Scientific article]
Melissa S. Cline,Giulia Babbi,Sandra Bonache,Yue Cao,Rita Casadio,Xavier de la Cruz,Orland Díez,Sara Gutiérrez‐Enríquez,Panagiotis Katsonis,Carmen Lai,Olivier Lichtarge,Pier L. Martelli,Gilad Mishne,Alejandro Moles‐Fernández,Gemma Montalban,Sean D. Mooney,Robert O'Conner,Lars Ootes,Selen Özkan,Natalia Padilla,Kymberleigh A. Pagel,Vikas Pejaver,Predrag Radivojac,Casandra Riera,Castrense Savojardo,Yang Shen,Yuanfei Sun,Scott Topper,Michael T. Parsons,Amanda B. Spurdle,David E. Goldgar,The ENIGMA Consortium, Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants, «HUMAN MUTATION», 2019, 40, pp. 1546 - 1556 [Scientific article]
Pejaver V.; Babbi G.; Casadio R.; Folkman L.; Katsonis P.; Kundu K.; Lichtarge O.; Martelli P.L.; Miller M.; Moult J.; Pal L.R.; Savojardo C.; Yin Y.; Zhou Y.; Radivojac P.; Bromberg Y., Assessment of methods for predicting the effects of PTEN and TPMT protein variants, «HUMAN MUTATION», 2019, 40, pp. 1495 - 1506 [Scientific article]
Clark W.T.; Kasak L.; Bakolitsa C.; Hu Z.; Andreoletti G.; Babbi G.; Bromberg Y.; Casadio R.; Dunbrack R.; Folkman L.; Ford C.T.; Jones D.; Katsonis P.; Kundu K.; Lichtarge O.; Martelli P.L.; Mooney S.D.; Nodzak C.; Pal L.R.; Radivojac P.; Savojardo C.; Shi X.; Zhou Y.; Uppal A.; Xu Q.; Yin Y.; Pejaver V.; Wang M.; Wei L.; Moult J.; Yu G.K.; Brenner S.E.; LeBowitz J.H., Assessment of predicted enzymatic activity of α-N-acetylglucosaminidase variants of unknown significance for CAGI 2016, «HUMAN MUTATION», 2019, 40, pp. 1519 - 1529 [Scientific article]
Savojardo, Castrense; Luchetti, Andrea*; Martelli, Pier Luigi; Casadio, Rita; Mantovani, Barbara, Draft genomes and genomic divergence of two Lepidurus tadpole shrimp species (Crustacea, Branchiopoda, Notostraca), «MOLECULAR ECOLOGY RESOURCES», 2019, 19, pp. 235 - 244 [Scientific article]Open Access
Savojardo C.; Petrosino M.; Babbi G.; Bovo S.; Corbi-Verge C.; Casadio R.; Fariselli P.; Folkman L.; Garg A.; Karimi M.; Katsonis P.; Kim P.M.; Lichtarge O.; Martelli P.L.; Pasquo A.; Pal D.; Shen Y.; Strokach A.V.; Turina P.; Zhou Y.; Andreoletti G.; Brenner S.E.; Chiaraluce R.; Consalvi V.; Capriotti E., Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge, «HUMAN MUTATION», 2019, 40, pp. 1392 - 1399 [Scientific article]Open Access
Savojardo, Castrense; Babbi, Giulia; Martelli, Pier Luigi; Casadio, Rita, Functional and Structural Features of Disease-Related Protein Variants, «INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES», 2019, 20, Article number: 1530 , pp. 1530 - 1544 [Scientific article]Open Access
Montanucci, Ludovica; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita; Fariselli, Piero, On the biases in predictions of protein stability changes upon variations: the INPS test case, «BIOINFORMATICS», 2019, 35, pp. 2525 - 2527 [Scientific article]
Monzon A.M.; Carraro M.; Chiricosta L.; Reggiani F.; Han J.; Ozturk K.; Wang Y.; Miller M.; Bromberg Y.; Capriotti E.; Savojardo C.; Babbi G.; Martelli P.L.; Casadio R.; Katsonis P.; Lichtarge O.; Carter H.; Kousi M.; Katsanis N.; Andreoletti G.; Moult J.; Brenner S.E.; Ferrari C.; Leonardi E.; Tosatto S.C.E., Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI-5, «HUMAN MUTATION», 2019, 40, pp. 1474 - 1485 [Scientific article]
McInnes, Gregory; Daneshjou, Roxana; Katsonis, Panagiostis; Lichtarge, Olivier; Srinivasan, Raj G; Rana, Sadhna; Radivojac, Predrag; Mooney, Sean D; Pagel, Kymberleigh A; Stamboulian, Moses; Jiang, Yuxiang; Capriotti, Emidio; Wang, Yanran; Bromberg, Yana; Bovo, Samuele; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita; Pal, Lipika R; Moult, John; Brenner, Steven; Altman, Russ, Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges, «HUMAN MUTATION», 2019, 40, pp. 1314 - 1320 [Scientific article]
Zhou N.; Jiang Y.; Bergquist T.R.; Lee A.J.; Kacsoh B.Z.; Crocker A.W.; Lewis K.A.; Georghiou G.; Nguyen H.N.; Hamid M.N.; Davis L.; Dogan T.; Atalay V.; Rifaioglu A.S.; Dalklran A.; Cetin Atalay R.; Zhang C.; Hurto R.L.; Freddolino P.L.; Zhang Y.; Bhat P.; Supek F.; Fernandez J.M.; Gemovic B.; Perovic V.R.; Davidovic R.S.; Sumonja N.; Veljkovic N.; Asgari E.; Mofrad M.R.K.; Profiti G.; Savojardo C.; Martelli P.L.; Casadio R.; Boecker F.; Schoof H.; Kahanda I.; Thurlby N.; McHardy A.C.; Renaux A.; Saidi R.; Gough J.; Freitas A.A.; Antczak M.; Fabris F.; Wass M.N.; Hou J.; Cheng J.; Wang Z.; Romero A.E.; Paccanaro A.; Yang H.; Goldberg T.; Zhao C.; Holm L.; Toronen P.; Medlar A.J.; Zosa E.; Borukhov I.; Novikov I.; Wilkins A.; Lichtarge O.; Chi P.-H.; Tseng W.-C.; Linial M.; Rose P.W.; Dessimoz C.; Vidulin V.; Dzeroski S.; Sillitoe I.; Das S.; Lees J.G.; Jones D.T.; Wan C.; Cozzetto D.; Fa R.; Torres M.; Warwick Vesztrocy A.; Rodriguez J.M.; Tress M.L.; Frasca M.; Notaro M.; Grossi G.;, The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens, «GENOME BIOLOGY», 2019, 20, Article number: 244 , pp. 1 - 23 [Scientific article]Open Access
Savojardo, Castrense; Martelli, Pier Luigi*; Fariselli, Piero; Profiti, Giuseppe; Casadio, Rita, BUSCA: An integrative web server to predict subcellular localization of proteins, «NUCLEIC ACIDS RESEARCH», 2018, 46, pp. W459 - W466 [Scientific article]Open Access
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Profiti, Giuseppe; Casadio, Rita, BUSCA is a web server for predicting subcellular localization of proteins, 2018. [Software]
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, DeepSig: deep learning improves signal peptide detection in proteins, «BIOINFORMATICS», 2018, 34, pp. 1690 - 1696 [Scientific article]Open Access
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, DeepSig is a software package and web server to predict signal peptides in proteins, 2018. [Software]
