Luchetti A.; Forni G.; Martelossi J.; Savojardo C.; Martelli P.L.; Casadio R.; Skaist A.M.; Wheelan S.J.; Mantovani B., Comparative genomics of tadpole shrimps (Crustacea, Branchiopoda, Notostraca): Dynamic genome evolution against the backdrop of morphological stasis, «GENOMICS», 2021, 113, pp. 4163 - 4172 [Scientific article]Open Access
Martelli P.L.; Savojardo C.; Fariselli P.; Tartari G.; Casadio R., Computer-Aided Prediction of Protein Mitochondrial Localization, in: Methods in Molecular Biology, New York, NY, Humana Press Inc., 2021, pp. 433 - 452 (METHODS IN MOLECULAR BIOLOGY) [Chapter or essay]
Manfredi M.; Savojardo C.; Martelli P.L.; Casadio R., DeepREx-WS: A web server for characterising protein–solvent interaction starting from sequence, «COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL», 2021, 19, pp. 5791 - 5799 [Scientific article]Open Access
Walsh I.; Fishman D.; Garcia-Gasulla D.; Titma T.; Pollastri G.; Capriotti E.; Casadio R.; Capella-Gutierrez S.; Cirillo D.; Del Conte A.; Dimopoulos A.C.; Del Angel V.D.; Dopazo J.; Fariselli P.; Fernandez J.M.; Huber F.; Kreshuk A.; Lenaerts T.; Martelli P.L.; Navarro A.; Broin P.O.; Pinero J.; Piovesan D.; Reczko M.; Ronzano F.; Satagopam V.; Savojardo C.; Spiwok V.; Tangaro M.A.; Tartari G.; Salgado D.; Valencia A.; Zambelli F.; Harrow J.; Psomopoulos F.E.; Tosatto S.C.E., DOME: recommendations for supervised machine learning validation in biology, «NATURE METHODS», 2021, 18, pp. 1122-1127 - 1127 [Scientific article]Open Access
Babbi G.; Savojardo C.; Martelli P.L.; Casadio R., Huntingtin: A protein with a peculiar solvent accessible surface, «INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES», 2021, 22, Article number: 2878 , pp. 1 - 12 [Scientific article]Open Access
Savojardo C.; Babbi G.; Martelli P.L.; Casadio R., Mapping OMIM Disease–Related Variations on Protein Domains Reveals an Association Among Variation Type, Pfam Models, and Disease Classes, «FRONTIERS IN MOLECULAR BIOSCIENCES», 2021, 8, Article number: 617016 , pp. 1 - 9 [Scientific article]Open Access
Savojardo C.; Martelli P.L.; Casadio R.; Fariselli P., On the critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation, «BRIEFINGS IN BIOINFORMATICS», 2021, 22, pp. 601 - 603 [Scientific article]Open Access
Savojardo, Castrense; Manfredi, Matteo; Martelli, Pier Luigi; Casadio, Rita, Solvent Accessibility of Residues Undergoing Pathogenic Variations in Humans: From Protein Structures to Protein Sequences, «FRONTIERS IN MOLECULAR BIOSCIENCES», 2021, 7, Article number: 626363 , pp. 1 - 9 [Scientific article]Open Access
Savojardo C.; Bruciaferri N.; Tartari G.; Martelli P.L.; Casadio R., DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks, «BIOINFORMATICS», 2020, 36, pp. 56 - 64 [Scientific article]Open Access
Babbi G.; Baldazzi D.; Savojardo C.; Martelli P.L.; Casadio R., Highlighting human enzymes active in different metabolic pathways and diseases: The case study of EC 1.2.3.1 and EC 2.3.1.9, «BIOMEDICINES», 2020, 8, Article number: 250 , pp. 250 - 262 [Scientific article]Open Access
Savojardo C.; Martelli P.L.; Tartari G.; Casadio R., Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito, «BMC BIOINFORMATICS», 2020, 21, Article number: 266 , pp. 266 - 278 [Scientific article]Open Access
Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita, Protein–Protein Interaction Methods and Protein Phase Separation, «ANNUAL REVIEW OF BIOMEDICAL DATA SCIENCE», 2020, 3, pp. 89 - 112 [Scientific article]
Savojardo, Castrense; Babbi, Giulia; Bovo, Samuele; Capriotti, Emidio; Martelli, Pier Luigi; Casadio, Rita, Are machine learning based methods suited to address complex biological problems? Lessons from CAGI-5 challenges, «HUMAN MUTATION», 2019, 40, pp. 1455 - 1462 [Scientific article]
Kasak, L.; Bakolitsa, C.; Hu, Z.; Yu, C.; Rine, J.; Dimster-Denk, D. F.; Pandey, G.; De Baets, G.; Bromberg, Y.; Cao, C.; Capriotti, E.; Casadio, R.; Van Durme, J.; Giollo, M.; Karchin, R.; Katsonis, P.; Leonardi, E.; Lichtarge, O.; Martelli, P. L.; Masica, D.; Mooney, S. D.; Olatubosun, A.; Radivojac, P.; Rousseau, F.; Pal, L. R.; Savojardo, C.; Schymkowitz, J.; Thusberg, J.; Tosatto, S. C. E.; Vihinen, M.; Valiaho, J.; Repo, S.; Moult, J.; Brenner, S. E.; Friedberg, I., Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants, «HUMAN MUTATION», 2019, 40, pp. 1530 - 1545 [Scientific article]
Mount, S. M.; Avsec, Z.; Carmel, L.; Casadio, R.; Celik, M. H.; Chen, K.; Cheng, J.; Cohen, N. E.; Fairbrother, W. G.; Fenesh, T.; Gagneur, J.; Gotea, V.; Holzer, T.; Lin, C. -F.; Martelli, P. L.; Naito, T.; Nguyen, T. Y. D.; Savojardo, C.; Unger, R.; Wang, R.; Yang, Y.; Zhao, H., Assessing predictions of the impact of variants on splicing in CAGI5, «HUMAN MUTATION», 2019, 40, pp. 1215 - 1224 [Scientific article]
