Giuntoli, Beatrice; Shukla, Vinay; Maggiorelli, Federica; Giorgi, Federico M.; Lombardi, Lara; Perata, Pierdomenico; Licausi, Francesco, Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana, «PLANT, CELL AND ENVIRONMENT», 2017, 40, pp. 2333 - 2346 [articolo]
Sibout, Richard*; Proost, Sebastian; Hansen, Bjoern Oest; Vaid, Neha; Giorgi, Federico M.; Ho-Yue-Kuang, Severine; Legée, Frédéric; Cézart, Laurent; Bouchabké-Coussa, Oumaya; Soulhat, Camille; Provart, Nicholas; Pasha, Asher; Le Bris, Philippe; Roujol, David; Hofte, Herman; Jamet, Elisabeth; Lapierre, Catherine; Persson, Staffan; Mutwil, Marek, Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon, «NEW PHYTOLOGIST», 2017, 215, pp. 1009 - 1025 [articolo]
Lachmann, Alexander; Giorgi, Federico M.; Lopez, Gonzalo; Califano, Andrea*, ARACNe-AP: Gene network reverse engineering through adaptive partitioning inference of mutual information, «BIOINFORMATICS», 2016, 32, pp. 2233 - 2235 [articolo]Open Access
Giorgi, Federico M; Lopez, Gonzalo; Woo, Jung H; Bisikirska, Brygida; Califano, Andrea; Bansal, Mukesh, Correction: Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information, «PLOS ONE», 2016, 11, pp. 42 - 54 [articolo]
Lachmann, Alexander; Giorgi, Federico M.; Alvarez, Mariano J.; Califano, Andrea, Detection and removal of spatial bias in multiwell assays, «BIOINFORMATICS», 2016, 32, pp. 1959 - 1965 [articolo]
Alvarez, Mariano J.; Shen, Yao; Giorgi, Federico M; Lachmann, Alexander; Ding, B Belinda; Hilda Ye, B.; Califano, Andrea, Functional characterization of somatic mutations in cancer using network-based inference of protein activity, «NATURE GENETICS», 2016, 48, pp. 838 - 847 [articolo]
Sepulveda, Jorge L.; Gutierrez-Pajares, Jorge L.; Luna, Aesis; Yao, Yuan; Tobias, John W.; Thomas, Steven; Woo, Yanghee; Giorgi, Federico; Komissarova, Elena V.; Califano, Andrea; Wang, Timothy C.; Sepulveda, Antonia R.*, High-definition CpG methylation of novel genes in gastric carcinogenesis identified by next-generation sequencing, «MODERN PATHOLOGY», 2016, 29, pp. 182 - 193 [articolo]
Hughes, James M.; Salvatori, Beatrice; Giorgi, Federico M.; Bozzoni, Irene; Fatica, Alessandro*, CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia, «JOURNAL OF HEMATOLOGY & ONCOLOGY», 2014, 7, Article number: 69, pp. 69 - 76 [articolo]
Giorgi, Federico M.; Lopez, Gonzalo; Woo, Jung H.; Bisikirska, Brygida; Califano, Andrea; Bansal, Mukesh, Inferring protein modulation from gene expression data using conditional mutual information, «PLOS ONE», 2014, 9, Article number: e109569, pp. 569 - 578 [articolo]
Tosetti, Roberta; Tardelli, Francesca; Tadiello, Alice; Zaffalon, Valerio; Giorgi, Federico M.; Guidi, Lucia; Trainotti, Livio; Bonghi, Claudio; Tonutti, Pietro*, Molecular and biochemical responses to wounding in mesocarp of ripe peach (Prunus persica L. Batsch) fruit, «POSTHARVEST BIOLOGY AND TECHNOLOGY», 2014, 90, pp. 40 - 51 [articolo]
Del Fabbro, Cristian; Scalabrin, Simone; Morgante, Michele; Giorgi, Federico M., An extensive evaluation of read trimming effects on illumina NGS data analysis, «PLOS ONE», 2013, 8, Article number: e85024, pp. 1932 - 1943 [articolo]
Giorgi, Federico M.; Del Fabbro, Cristian; Licausi, Francesco, Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana, «BIOINFORMATICS», 2013, 29, pp. 717 - 724 [articolo]
Li, Jing-Woei*; Bolser, Dan; Manske, Magnus; Giorgi, Federico Manuel; Vyahhi, Nikolay; Usadel, Björn; Clavijo, Bernardo J.; Chan, Ting-Fung; Wong, Nathalie; Zerbino, Daniel; Schneider, Maria Victoria, The NGS wikibook: A dynamic collaborative online training effort with long-termsustainability, «BRIEFINGS IN BIOINFORMATICS», 2013, 14, Article number: bbt045, pp. 548 - 555 [articolo]
Lee, Yang P.; Giorgi, Federico M.; Lohse, Marc; Kvederaviciute, Kotryna; Klages, Sven; Usadel, Björn; Meskiene, Irute; Reinhardt, Richard; Hincha, Dirk K.*, Transcriptome sequencing and microarray design for functional genomics in the extremophile arabidopsis relative thellungiella salsuginea (eutrema salsugineum), «BMC GENOMICS», 2013, 14, Article number: 793, pp. 1 - 19 [articolo]Open Access
Giorgi F,, Expression-based reverse engineering of plant transcriptional networks, Saarbrücken, LAP LAMBERT Academic Publishing, 2012, pp. 140 . [libro]
