Ferrè, Fabrizio; Colantoni, Alessio; Helmer-Citterich, Manuela, Revealing protein-lncRNA interaction, «BRIEFINGS IN BIOINFORMATICS», 2016, 17, Article number: bbv031, pp. 106 - 116 [articolo]Open Access
Crisà, Alessandra; Ferrè, Fabrizio; Chillemi, Giovanni; Moioli, Bianca, RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk, «BMC VETERINARY RESEARCH», 2016, 12, pp. 264 - 284 [articolo]Open Access
Bongiorni, S; Gruber, C E M; Chillemi, G; Bueno, S; Failla, S; Moioli, B; Ferrè, F; Valentini, A, Skeletal muscle transcriptional profiles in two Italian beef breeds, Chianina and Maremmana, reveal breed specific variation, «MOLECULAR BIOLOGY REPORTS», 2016, 43, pp. 253 - 268 [articolo]
Morini, Elena; Rizzacasa, Barbara; Pucci, Sabina; Polidoro, Chiara; Ferrè, Fabrizio; Caporossi, Daniela; Helmer Citterich, Manuela; Novelli, Giuseppe; Amati, Francesca, The human rs1050286 polymorphism alters LOX-1 expression through modifying miR-24 binding, «JOURNAL OF CELLULAR AND MOLECULAR MEDICINE», 2016, 20, pp. 181 - 187 [articolo]Open Access
Bongiorni, S; Gruber, C.E.M.; Bueno, S.; Chillemi, G.; Ferrè, F.; Failla, S.; Moioli, B.; Valentini, A., Transcriptomic investigation of meat tenderness in two Italian cattle breeds, «ANIMAL GENETICS», 2016, 47, pp. 273 - 287 [articolo]
Mattei, Eugenio; Helmer-Citterich, Manuela; Ferrè, Fabrizio, A simple protocol for the inference of RNA global pairwise alignments, in: RNA Bioinformatics, New York, Springer, 2015, pp. 39 - 47 [capitolo di libro]
Mattei, Eugenio; Pietrosanto, Marco; Ferrè, Fabrizio; Helmer-Citterich, Manuela, Web-Beagle: a web server for the alignment of RNA secondary structures, «NUCLEIC ACIDS RESEARCH», 2015, 43, pp. W493 - W497 [articolo]Open Access
Mattei E;Ausiello G;Ferrè F;Helmer-Citterich M, A novel approach to represent and compare RNA secondary structures., «NUCLEIC ACIDS RESEARCH», 2014, 42, pp. 6146 - 6157 [articolo]Open Access
Palmeri A;Ausiello G;Ferre F;Helmer-Citterich M;Gherardini PF, A proteome-wide Domain-centric Perspective on Protein Phosphorylation., «MOLECULAR & CELLULAR PROTEOMICS», 2014, 13, pp. 2198 - 2212 [articolo]
Ferrè F;Palmeri A;Helmer-Citterich M, Computational methods for analysis and inference of kinase/inhibitor relationships., «FRONTIERS IN GENETICS», 2014, 5, Article number: 196, pp. 1 - 5 [articolo]Open Access
Palmeri A;Ferrè F;Helmer-Citterich M, Exploiting holistic approaches to model specificity in protein phosphorylation., «FRONTIERS IN GENETICS», 2014, 5, Article number: 315, pp. 1 - 11 [articolo]Open Access
Biagini, Tommaso; Bartolini, Barbara; Giombini, Emanuela; Capobianchi, Maria R.; Ferrè, Fabrizio; Chillemi, Giovanni; Desideri, Alessandro, Performances of bioinformatics pipelines for the identification of pathogens in clinical samples with the de novo assembly approaches: Focus on 2009 pandemic influenza A (H1N1), «THE OPEN BIOINFORMATICS JOURNAL», 2014, 8, pp. 1 - 5 [articolo]
Colantoni A;Bianchi V;Gherardini PF;Scalia Tomba G;Ausiello G;Helmer Citterich M;FERRE' F., Alternative splicing tends to avoid partial removals of protein-protein interaction sites, «BMC GENOMICS», 2013, 14, pp. 1 - 12 [articolo]
Bianchi V;Colantoni A;Gherardini PF;Ausiello G;FERRE' F.;Helmer Citterich M, DBATE: DataBase of Alternative Transcripts Expression, «DATABASE», 2013, 2013, pp. 1 - 9 [articolo]
Parca L;FERRE' F.;Ausiello G;Helmer Citterich M, Nucleos: a web server for the identification of nucleotide binding sites in protein structures, «NUCLEIC ACIDS RESEARCH», 2013, 41, pp. W281 - W285 [articolo]
