Paci, G; Cristadoro, G; Monti, B; Lenci, M; Degli Esposti, M; Castellani, Gc; Remondini, D, Characterization of DNA methylation as a function of biological complexity via dinucleotide inter-distances, «PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES A: MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES», 2016, 374, pp. 1 - 11 [articolo]Open Access
Saccenti, Edoardo; Menichetti, Giulia; Ghini, Veronica; Remondini, Daniel; Tenori, Leonardo; Luchinat, Claudio, Entropy-Based Network Representation of the Individual Metabolic Phenotype, «JOURNAL OF PROTEOME RESEARCH», 2016, 15, pp. 3298 - 3307 [articolo]
Bersanelli, Matteo; Mosca, Ettore; Remondini, Daniel; Giampieri, Enrico; Sala, Claudia; Castellani, Gastone; Milanesi, Luciano, Methods for the integration of multi-omics data: Mathematical aspects, «BMC BIOINFORMATICS», 2016, 17 Suppl 2, pp. 15 - 25 [articolo]Open Access
Bersanelli, Matteo; Mosca, Ettore; Remondini, Daniel; Castellani, Gastone; Milanesi, Luciano, Network diffusion-based analysis of high-throughput data for the detection of differentially enriched modules, «SCIENTIFIC REPORTS», 2016, 6, Article number: 34841, pp. 1 - 12 [articolo]Open Access
Menichetti, Giulia; Fariselli, Piero; Remondini, Daniel, Network measures for protein folding state discrimination, «SCIENTIFIC REPORTS», 2016, 6, Article number: 30367, pp. 1 - 8 [articolo]Open Access
Martello, Marina; Remondini, Daniel; Borsi, Enrica; Santacroce, Barbara; Procacci, M.; Pezzi, Annalisa; Dico, F. A.; Martinelli, Giovanni; Zamagni, Elena; Tacchetti, Paola; Pantani, Lucia; Testoni, Nicoletta; Marzocchi, Giulia; Rocchi, Serena; Zannetti, BEATRICE ANNA; Mancuso, Katia; Cavo, Michele; Terragna, Carolina, Opposite activation of the Hedgehog pathway in CD138+ plasma cells and CD138-CD19+ B cells identifies two subgroups of patients with multiple myeloma and different prognosis, «LEUKEMIA», 2016, 30, pp. 1869 - 1876 [articolo]
do Valle, Ítalo Faria; Giampieri, Enrico; Simonetti, Giorgia; Padella, Antonella; Manfrini, Marco; Ferrari, Anna; Papayannidis, Cristina; Zironi, Isabella; Garonzi, Marianna; Bernardi, Simona; Delledonne, Massimo; Martinelli, Giovanni; Remondini, Daniel; Castellani, Gastone, Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data, «BMC BIOINFORMATICS», 2016, 17, Article number: 341, pp. 27 - 35 [articolo]Open Access
Simkó, Myrtill; Remondini, Daniel; Zeni, Olga; Scarfi, Maria Rosaria, Quality matters: Systematic analysis of endpoints related to “cellular life” in vitro data of radiofrequency electromagnetic field exposure, «INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH», 2016, 13, Article number: 701, pp. 701 - 716 [articolo]
Sala, Claudia; Vitali, Silvia; Giampieri, Enrico; do Valle, Ìtalo Faria; Remondini, Daniel; Garagnani, Paolo; Bersanelli, Matteo; Mosca, Ettore; Milanesi, Luciano; Castellani, Gastone, Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data, «BMC BIOINFORMATICS», 2016, 17, pp. 16 - 25 [articolo]Open Access
Castellani, Gastone C.; Menichetti, Giulia; Garagnani, Paolo; Bacalini, Maria Giulia; Pirazzini, Chiara; Franceschi, Claudio; Collino, Sebastiano; Sala, Claudia; Remondini, Daniel; Giampieri, Enrico; Mosca, Ettore; Bersanelli, Matteo; Vitali, Silvia; Do Valle, Italo Faria; Liò, Pietro; Milanesi, Luciano, Systems medicine of inflammaging, «BRIEFINGS IN BIOINFORMATICS», 2016, 17, Article number: bbv062, pp. 527 - 540 [articolo]Open Access
Terragna, Carolina; Remondini, Daniel; Martello, Marina; Zamagni, Elena; Pantani, Lucia; Patriarca, Francesca; Pezzi, Annalisa; Levi, Giuseppe; Offidani, Massimo; Proserpio, Ilaria; De Sabbata, Giovanni; Tacchetti, Paola; Cangialosi, Clotilde; Ciambelli, Fabrizio; Viganò, Clara Virginia; Dico, Flores Angela; Santacroce, Barbara; Borsi, Enrica; Brioli, Annamaria; Marzocchi, Giulia; Castellani, Gastone; Martinelli, Giovanni; Palumbo, Antonio; Cavo, Michele, The genetic and genomic background of multiple myeloma patients achieving complete response after induction therapy with bortezomib, thalidomide and dexamethasone (VTD), «ONCOTARGET», 2016, 7, pp. 9666 - 9679 [articolo]
Bacalini MG; Boattini A; Gentilini D; Giampieri E; Pirazzini C; Giuliani C;
Fontanesi E; Remondini D; Capri M; Del Rio A; Luiselli D; Vitale G; Mari D;
Castellani G; Di Blasio AM; Salvioli S; Franceschi C; Garagnani P., A meta-analysis on age-associated changes in blood DNA methylation: Results from an original analysis pipeline for Infinium 450k data, «AGING», 2015, 7, pp. 97 - 109 [articolo]Open Access
Simonetti, Giorgia; Padella, Antonella; FARIA DO VALLE, Italo; Manfrini, Marco; Papayannidis, Cristina; Baldazzi, Carmen; Fontana, MARIA CHIARA; Guadagnuolo, Viviana; Ferrari, Anna; Zago, Elisa; Garonzi, Marianna; Bernardi, Simona; Ottaviani, Emanuela; Astolfi, Annalisa; Abbenante, Mariachiara; Marconi, Giovanni; Soverini, Simona; Cavo, Michele; Testoni, Nicoletta; Ferrarini, Alberto; Delledonne, Massimo; Haferlach, Torsten; Remondini, Daniel; Iacobucci, Ilaria; Martinelli, Giovanni, A Specific Pattern of Somatic Mutations Associates with Poor Prognosis Aneuploid Acute Myeloid Leukemia: Results from the European NGS-PTL Consortium, «BLOOD», 2015, 126, pp. 3840 - 3840 [abstract]
Giampieri, Enrico; De Cecco, Marco; Remondini, Daniel; Sedivy, John; Castellani, Gastone, Active degradation explains the distribution of nuclear proteins during cellular senescence, «PLOS ONE», 2015, 10, Article number: e0118442, pp. 1 - 25 [articolo]Open Access
Faria do Valle, Italo; Giampieri, Enrico; Padella, Antonella; Simonetti, Giorgia; Manfrini, Marco; Sala, Claudia; Vitali, Silvia; Martinelli, Giovanni; Remondini, Daniel; Castellani, Gastone ., An analysis pipeline for variant discovery in Whole Exome Sequencing data of cancer samples., in: Conference Proceedings 12th Bits Annual Meeting, 2015, pp. 100 - 101 (atti di: Conference Proceedings 12th Bits Annual Meeting, Milano, Italy, June 3-5 2015) [Contributo in Atti di convegno]
