Savojardo, Castrense; Luchetti, Andrea*; Martelli, Pier Luigi; Casadio, Rita; Mantovani, Barbara, Draft genomes and genomic divergence of two Lepidurus tadpole shrimp species (Crustacea, Branchiopoda, Notostraca), «MOLECULAR ECOLOGY RESOURCES», 2019, 19, pp. 235 - 244 [articolo]Open Access
Savojardo C.; Petrosino M.; Babbi G.; Bovo S.; Corbi-Verge C.; Casadio R.; Fariselli P.; Folkman L.; Garg A.; Karimi M.; Katsonis P.; Kim P.M.; Lichtarge O.; Martelli P.L.; Pasquo A.; Pal D.; Shen Y.; Strokach A.V.; Turina P.; Zhou Y.; Andreoletti G.; Brenner S.E.; Chiaraluce R.; Consalvi V.; Capriotti E., Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge, «HUMAN MUTATION», 2019, 40, pp. 1392 - 1399 [articolo]Open Access
Savojardo, Castrense; Babbi, Giulia; Martelli, Pier Luigi; Casadio, Rita, Functional and Structural Features of Disease-Related Protein Variants, «INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES», 2019, 20, Article number: 1530, pp. 1530 - 1544 [articolo]Open Access
Montanucci, Ludovica; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita; Fariselli, Piero, On the biases in predictions of protein stability changes upon variations: the INPS test case, «BIOINFORMATICS», 2019, 35, pp. 2525 - 2527 [articolo]
Monzon A.M.; Carraro M.; Chiricosta L.; Reggiani F.; Han J.; Ozturk K.; Wang Y.; Miller M.; Bromberg Y.; Capriotti E.; Savojardo C.; Babbi G.; Martelli P.L.; Casadio R.; Katsonis P.; Lichtarge O.; Carter H.; Kousi M.; Katsanis N.; Andreoletti G.; Moult J.; Brenner S.E.; Ferrari C.; Leonardi E.; Tosatto S.C.E., Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI-5, «HUMAN MUTATION», 2019, 40, pp. 1474 - 1485 [articolo]
McInnes, Gregory; Daneshjou, Roxana; Katsonis, Panagiostis; Lichtarge, Olivier; Srinivasan, Raj G; Rana, Sadhna; Radivojac, Predrag; Mooney, Sean D; Pagel, Kymberleigh A; Stamboulian, Moses; Jiang, Yuxiang; Capriotti, Emidio; Wang, Yanran; Bromberg, Yana; Bovo, Samuele; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita; Pal, Lipika R; Moult, John; Brenner, Steven; Altman, Russ, Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges, «HUMAN MUTATION», 2019, 40, pp. 1314 - 1320 [articolo]
Zhou N.; Jiang Y.; Bergquist T.R.; Lee A.J.; Kacsoh B.Z.; Crocker A.W.; Lewis K.A.; Georghiou G.; Nguyen H.N.; Hamid M.N.; Davis L.; Dogan T.; Atalay V.; Rifaioglu A.S.; Dalklran A.; Cetin Atalay R.; Zhang C.; Hurto R.L.; Freddolino P.L.; Zhang Y.; Bhat P.; Supek F.; Fernandez J.M.; Gemovic B.; Perovic V.R.; Davidovic R.S.; Sumonja N.; Veljkovic N.; Asgari E.; Mofrad M.R.K.; Profiti G.; Savojardo C.; Martelli P.L.; Casadio R.; Boecker F.; Schoof H.; Kahanda I.; Thurlby N.; McHardy A.C.; Renaux A.; Saidi R.; Gough J.; Freitas A.A.; Antczak M.; Fabris F.; Wass M.N.; Hou J.; Cheng J.; Wang Z.; Romero A.E.; Paccanaro A.; Yang H.; Goldberg T.; Zhao C.; Holm L.; Toronen P.; Medlar A.J.; Zosa E.; Borukhov I.; Novikov I.; Wilkins A.; Lichtarge O.; Chi P.-H.; Tseng W.-C.; Linial M.; Rose P.W.; Dessimoz C.; Vidulin V.; Dzeroski S.; Sillitoe I.; Das S.; Lees J.G.; Jones D.T.; Wan C.; Cozzetto D.; Fa R.; Torres M.; Warwick Vesztrocy A.; Rodriguez J.M.; Tress M.L.; Frasca M.; Notaro M.; Grossi G.; Petrini A.; Re M.; Valentini G.; Mesiti M.; Roche D.B.; Reeb J.; Ritchie D.W.; Aridhi S.; Alborzi S.Z.; Devignes M.-D.; Koo D.C.E.; Bonneau R.; Gligorijevic V.; Barot M.; Fang H.; Toppo S.; Lavezzo E.; Falda M.; Berselli M.; Tosatto S.C.E.; Carraro M.; Piovesan D.; Ur Rehman H.; Mao Q.; Zhang S.; Vucetic S.; Black G.S.; Jo D.; Suh E.; Dayton J.B.; Larsen D.J.; Omdahl A.R.; McGuffin L.J.; Brackenridge D.A.; Babbitt P.C.; Yunes J.M.; Fontana P.; Zhang F.; Zhu S.; You R.; Zhang Z.; Dai S.; Yao S.; Tian W.; Cao R.; Chandler C.; Amezola M.; Johnson D.; Chang J.-M.; Liao W.-H.; Liu Y.-W.; Pascarelli S.; Frank Y.; Hoehndorf R.; Kulmanov M.; Boudellioua I.; Politano G.; Di Carlo S.; Benso A.; Hakala K.; Ginter F.; Mehryary F.; Kaewphan S.; Bjorne J.; Moen H.; Tolvanen M.E.E.; Salakoski T.; Kihara D.; Jain A.; Smuc T.; Altenhoff A.; Ben-Hur A.; Rost B.; Brenner S.E.; Orengo C.A.; Jeffery C.J.; Bosco G.; Hogan D.A.; Martin M.J.; O'Donovan C.; Mooney S.D.; Greene C.S.; Radivojac P.; Friedberg I., The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens, «GENOME BIOLOGY», 2019, 20, Article number: 244, pp. 1 - 23 [articolo]Open Access
Savojardo, Castrense; Martelli, Pier Luigi*; Fariselli, Piero; Profiti, Giuseppe; Casadio, Rita, BUSCA: An integrative web server to predict subcellular localization of proteins, «NUCLEIC ACIDS RESEARCH», 2018, 46, pp. W459 - W466 [articolo]Open Access
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Profiti, Giuseppe; Casadio, Rita, BUSCA is a web server for predicting subcellular localization of proteins, 2018. [software]
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, DeepSig: deep learning improves signal peptide detection in proteins, «BIOINFORMATICS», 2018, 34, pp. 1690 - 1696 [articolo]Open Access
Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita, DeepSig is a software package and web server to predict signal peptides in proteins, 2018. [software]
Martelli PL, Profiti G, Casadio R, Savojardo C, Integrating ELIXIR Italy with ELIXIR Interoperability platform activities, in: F1000 Research, 2018(atti di: ELIXIR All-hands meeting, Berlino, 4-7 giugno 2018) [atti di convegno-poster]Open Access
Pier Luigi Martelli, Castrense Savojardo, Giuseppe Profiti, Rita Casadio, Transmembrane Domain Prediction, in: Encyclopedia of Bioinformatics and Computational Biology, Oxford, Academic Press, 2018, pp. 46 - 52 [capitolo di libro]
Giulia Babbi, Pier Luigi Martelli, Giuseppe Profiti, Samuele Bovo, Castrense Savojardo, Rita Casadio, Analysing the relations among genes and polygenic diseases with eDGAR, in: F1000Research, 2017(atti di: NGS 2017, Barcellona (Spain), 3-4-5 Aprile 2017) [atti di convegno-poster]
Babbi, Giulia; Martelli, Pier Luigi; Profiti, Giuseppe; Bovo, Samuele; Savojardo, Castrense; Casadio, Rita, eDGAR: a database of Disease-Gene Associations with annotated Relationships among genes, «BMC GENOMICS», 2017, 18, Article number: 554, pp. 25 - 64 [articolo]Open Access
