Savojardo C.; Babbi G.; Martelli P.L.; Casadio R., Mapping OMIM Disease–Related Variations on Protein Domains Reveals an Association Among Variation Type, Pfam Models, and Disease Classes, «FRONTIERS IN MOLECULAR BIOSCIENCES», 2021, 8, Article number: 617016, pp. 1 - 9 [articolo]Open Access
Savojardo C.; Martelli P.L.; Casadio R.; Fariselli P., On the critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation, «BRIEFINGS IN BIOINFORMATICS», 2021, 22, pp. 601 - 603 [articolo]Open Access
Savojardo, Castrense; Manfredi, Matteo; Martelli, Pier Luigi; Casadio, Rita, Solvent Accessibility of Residues Undergoing Pathogenic Variations in Humans: From Protein Structures to Protein Sequences, «FRONTIERS IN MOLECULAR BIOSCIENCES», 2021, 7, Article number: 626363, pp. 1 - 9 [articolo]Open Access
Savojardo C.; Bruciaferri N.; Tartari G.; Martelli P.L.; Casadio R., DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks, «BIOINFORMATICS», 2020, 36, pp. 56 - 64 [articolo]Open Access
Babbi G.; Baldazzi D.; Savojardo C.; Martelli P.L.; Casadio R., Highlighting human enzymes active in different metabolic pathways and diseases: The case study of EC 1.2.3.1 and EC 2.3.1.9, «BIOMEDICINES», 2020, 8, Article number: 250, pp. 250 - 262 [articolo]Open Access
Savojardo C.; Martelli P.L.; Tartari G.; Casadio R., Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito, «BMC BIOINFORMATICS», 2020, 21, Article number: 266, pp. 266 - 278 [articolo]Open Access
Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita, Protein–Protein Interaction Methods and Protein Phase Separation, «ANNUAL REVIEW OF BIOMEDICAL DATA SCIENCE», 2020, 3, pp. 89 - 112 [articolo]
Savojardo, Castrense; Babbi, Giulia; Bovo, Samuele; Capriotti, Emidio; Martelli, Pier Luigi; Casadio, Rita, Are machine learning based methods suited to address complex biological problems? Lessons from CAGI-5 challenges, «HUMAN MUTATION», 2019, 40, pp. 1455 - 1462 [articolo]
Kasak L.; Bakolitsa C.; Hu Z.; Yu C.; Rine J.; Dimster-Denk D.F.; Pandey G.; De Baets G.; Bromberg Y.; Cao C.; Capriotti E.; Casadio R.; Van Durme J.; Giollo M.; Karchin R.; Katsonis P.; Leonardi E.; Lichtarge O.; Martelli P.L.; Masica D.; Mooney S.D.; Olatubosun A.; Radivojac P.; Rousseau F.; Pal L.R.; Savojardo C.; Schymkowitz J.; Thusberg J.; Tosatto S.C.E.; Vihinen M.; Valiaho J.; Repo S.; Moult J.; Brenner S.E.; Friedberg I., Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants, «HUMAN MUTATION», 2019, 40, pp. 1530 - 1545 [articolo]
Mount S.M.; Avsec Z.; Carmel L.; Casadio R.; Celik M.H.; Chen K.; Cheng J.; Cohen N.E.; Fairbrother W.G.; Fenesh T.; Gagneur J.; Gotea V.; Holzer T.; Lin C.-F.; Martelli P.L.; Naito T.; Nguyen T.Y.D.; Savojardo C.; Unger R.; Wang R.; Yang Y.; Zhao H., Assessing predictions of the impact of variants on splicing in CAGI5, «HUMAN MUTATION», 2019, 40, pp. 1215 - 1224 [articolo]
Zhang J.; Kinch L.N.; Cong Q.; Katsonis P.; Lichtarge O.; Savojardo C.; Babbi G.; Martelli P.L.; Capriotti E.; Casadio R.; Garg A.; Pal D.; Weile J.; Sun S.; Verby M.; Roth F.P.; Grishin N.V., Assessing predictions on fitness effects of missense variants in calmodulin, «HUMAN MUTATION», 2019, 40, pp. 1463 - 1473 [articolo]
Voskanian A.; Katsonis P.; Lichtarge O.; Pejaver V.; Radivojac P.; Mooney S.D.; Capriotti E.; Bromberg Y.; Wang Y.; Miller M.; Martelli P.L.; Savojardo C.; Babbi G.; Casadio R.; Cao Y.; Sun Y.; Shen Y.; Garg A.; Pal D.; Yu Y.; Huff C.D.; Tavtigian S.V.; Young E.; Neuhausen S.L.; Ziv E.; Pal L.R.; Andreoletti G.; Brenner S.E.; Kann M.G., Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer, «HUMAN MUTATION», 2019, 40, pp. 1612 - 1622 [articolo]
Melissa S. Cline,Giulia Babbi,Sandra Bonache,Yue Cao,Rita Casadio,Xavier de la Cruz,Orland Díez,Sara Gutiérrez‐Enríquez,Panagiotis Katsonis,Carmen Lai,Olivier Lichtarge,Pier L. Martelli,Gilad Mishne,Alejandro Moles‐Fernández,Gemma Montalban,Sean D. Mooney,Robert O'Conner,Lars Ootes,Selen Özkan,Natalia Padilla,Kymberleigh A. Pagel,Vikas Pejaver,Predrag Radivojac,Casandra Riera,Castrense Savojardo,Yang Shen,Yuanfei Sun,Scott Topper,Michael T. Parsons,Amanda B. Spurdle,David E. Goldgar,The ENIGMA Consortium, Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants, «HUMAN MUTATION», 2019, 40, pp. 1546 - 1556 [articolo]
Pejaver V.; Babbi G.; Casadio R.; Folkman L.; Katsonis P.; Kundu K.; Lichtarge O.; Martelli P.L.; Miller M.; Moult J.; Pal L.R.; Savojardo C.; Yin Y.; Zhou Y.; Radivojac P.; Bromberg Y., Assessment of methods for predicting the effects of PTEN and TPMT protein variants, «HUMAN MUTATION», 2019, 40, pp. 1495 - 1506 [articolo]
Clark W.T.; Kasak L.; Bakolitsa C.; Hu Z.; Andreoletti G.; Babbi G.; Bromberg Y.; Casadio R.; Dunbrack R.; Folkman L.; Ford C.T.; Jones D.; Katsonis P.; Kundu K.; Lichtarge O.; Martelli P.L.; Mooney S.D.; Nodzak C.; Pal L.R.; Radivojac P.; Savojardo C.; Shi X.; Zhou Y.; Uppal A.; Xu Q.; Yin Y.; Pejaver V.; Wang M.; Wei L.; Moult J.; Yu G.K.; Brenner S.E.; LeBowitz J.H., Assessment of predicted enzymatic activity of α-N-acetylglucosaminidase variants of unknown significance for CAGI 2016, «HUMAN MUTATION», 2019, 40, pp. 1519 - 1529 [articolo]
