Savojardo C.; Martelli P.L.; Casadio R.; Fariselli P., On the critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation, «BRIEFINGS IN BIOINFORMATICS», 2021, 22, pp. 601 - 603 [articolo]Open Access
Savojardo, Castrense; Manfredi, Matteo; Martelli, Pier Luigi; Casadio, Rita, Solvent Accessibility of Residues Undergoing Pathogenic Variations in Humans: From Protein Structures to Protein Sequences, «FRONTIERS IN MOLECULAR BIOSCIENCES», 2021, 7, Article number: 626363, pp. 1 - 9 [articolo]Open Access
Ledwaba M.B.; Glover B.A.; Matle I.; Profiti G.; Martelli P.L.; Casadio R.; Zilli K.; Janowicz A.; Marotta F.; Garofolo G.; van Heerden H., Whole genome sequence analysis of brucella abortus isolates from various regions of South Africa, «MICROORGANISMS», 2021, 9, Article number: 570, pp. 1 - 14 [articolo]Open Access
Turri, Valentina; Latinovic, Olga S.; Bonafè, Massimiliano; Toyang, Ngeh; Parigi, Maria; Calassanzio, Matteo; Martelli, Pier Luigi; Vagheggini, Alessandro; Abbati, Giulia; Sarnelli, Anna; Casadio, Rita; Ratti, Claudio; Massi, Paola; Schoelz, James E.; Salvato, Maria S.; Piccinini, Filippo; Martinelli, Giovanni, Cauliflower Mosaic Virus TAV, a Plant Virus Protein That Functions like Ribonuclease H1 and is Cytotoxic to Glioma Cells, «BIOMED RESEARCH INTERNATIONAL», 2020, 2020, Article number: 7465242, pp. 1 - 10 [articolo]Open Access
Savojardo C.; Bruciaferri N.; Tartari G.; Martelli P.L.; Casadio R., DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks, «BIOINFORMATICS», 2020, 36, pp. 56 - 64 [articolo]Open Access
Babbi G.; Baldazzi D.; Savojardo C.; Martelli P.L.; Casadio R., Highlighting human enzymes active in different metabolic pathways and diseases: The case study of EC 1.2.3.1 and EC 2.3.1.9, «BIOMEDICINES», 2020, 8, Article number: 250, pp. 250 - 262 [articolo]Open Access
Savojardo C.; Martelli P.L.; Tartari G.; Casadio R., Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito, «BMC BIOINFORMATICS», 2020, 21, Article number: 266, pp. 266 - 278 [articolo]Open Access
Samuele Bovo, Pier Luigi Martelli, Pietro Di Lena, Rita Casadio, NETGE-PLUS, 2020. [software]
Bovo S.; Martelli P.L.; Di Lena P.; Casadio R., NETGE-PLUS: Standard and Network-Based Gene Enrichment Analysis in Human and Model Organisms, «JOURNAL OF PROTEOME RESEARCH», 2020, 19, pp. 2873 - 2878 [articolo]Open Access
Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita, Protein–Protein Interaction Methods and Protein Phase Separation, «ANNUAL REVIEW OF BIOMEDICAL DATA SCIENCE», 2020, 3, pp. 89 - 112 [articolo]
Savojardo, Castrense; Babbi, Giulia; Bovo, Samuele; Capriotti, Emidio; Martelli, Pier Luigi; Casadio, Rita, Are machine learning based methods suited to address complex biological problems? Lessons from CAGI-5 challenges, «HUMAN MUTATION», 2019, 40, pp. 1455 - 1462 [articolo]
Kasak, L.; Bakolitsa, C.; Hu, Z.; Yu, C.; Rine, J.; Dimster-Denk, D. F.; Pandey, G.; De Baets, G.; Bromberg, Y.; Cao, C.; Capriotti, E.; Casadio, R.; Van Durme, J.; Giollo, M.; Karchin, R.; Katsonis, P.; Leonardi, E.; Lichtarge, O.; Martelli, P. L.; Masica, D.; Mooney, S. D.; Olatubosun, A.; Radivojac, P.; Rousseau, F.; Pal, L. R.; Savojardo, C.; Schymkowitz, J.; Thusberg, J.; Tosatto, S. C. E.; Vihinen, M.; Valiaho, J.; Repo, S.; Moult, J.; Brenner, S. E.; Friedberg, I., Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants, «HUMAN MUTATION», 2019, 40, pp. 1530 - 1545 [articolo]
Mount, S. M.; Avsec, Z.; Carmel, L.; Casadio, R.; Celik, M. H.; Chen, K.; Cheng, J.; Cohen, N. E.; Fairbrother, W. G.; Fenesh, T.; Gagneur, J.; Gotea, V.; Holzer, T.; Lin, C. -F.; Martelli, P. L.; Naito, T.; Nguyen, T. Y. D.; Savojardo, C.; Unger, R.; Wang, R.; Yang, Y.; Zhao, H., Assessing predictions of the impact of variants on splicing in CAGI5, «HUMAN MUTATION», 2019, 40, pp. 1215 - 1224 [articolo]
Zhang J.; Kinch L.N.; Cong Q.; Katsonis P.; Lichtarge O.; Savojardo C.; Babbi G.; Martelli P.L.; Capriotti E.; Casadio R.; Garg A.; Pal D.; Weile J.; Sun S.; Verby M.; Roth F.P.; Grishin N.V., Assessing predictions on fitness effects of missense variants in calmodulin, «HUMAN MUTATION», 2019, 40, pp. 1463 - 1473 [articolo]
Voskanian, A.; Katsonis, P.; Lichtarge, O.; Pejaver, V.; Radivojac, P.; Mooney, S. D.; Capriotti, E.; Bromberg, Y.; Wang, Y.; Miller, M.; Martelli, P. L.; Savojardo, C.; Babbi, G.; Casadio, R.; Cao, Y.; Sun, Y.; Shen, Y.; Garg, A.; Pal, D.; Yu, Y.; Huff, C. D.; Tavtigian, S. V.; Young, E.; Neuhausen, S. L.; Ziv, E.; Pal, L. R.; Andreoletti, G.; Brenner, S. E.; Kann, M. G., Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer, «HUMAN MUTATION», 2019, 40, pp. 1612 - 1622 [articolo]
